Nextflow pipeline to assemble genomes from nanopore reads.
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Updated
May 6, 2024 - Nextflow
Nextflow pipeline to assemble genomes from nanopore reads.
Course for ROPES summer school, May 2023
PathoPore - Longer Sequences and NextFlow Faster Analysis
Taxonomic profiling ONT metagenomics reads using minimap2
Pathogen whole genome sequence (WGS) data analysis pipeline
See the main fork of this repository here >>> https://github.com/nf-core/nanoseq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.
Pipeline for hybrid assembly using short and long reads.
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.
Basic workflow for nanopore sequencing data
A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
SARS-CoV-2 workflow for nanopore sequence data
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