fast utils for fetch and dump NCBI SRA archive raw data
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Updated
May 25, 2023 - Python
fast utils for fetch and dump NCBI SRA archive raw data
Pulls Metadata from NCBI based on Sample name or SRR #
Data and code used in the Plant Genomes dashboard
frequency of high level ranks in sequence databases
This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
A tool to prepare files and run/monitor programmatic submissions to NCBI
The Docker integration for the r2g project.
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
Extract metadata from biosamples in NCBI
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Package for fetching metadata and downloading data from SRA/ENA/GEO
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