Database for experimental neuroscience laboratories
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Updated
May 23, 2024 - Python
Database for experimental neuroscience laboratories
Brain Modeling Toolkit
A toolkit for detecting and tracking crabs in the field.
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).
Numerical solver for coupled population density equations
Ontologized versions of the ABA structureGraphs - with mappings to Uberon
Research data management in biomedical and machine learning applications
Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE
Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
In order to accelerate progress in cohort studies, we proposed a hierarchical neuroscience knowledge base consisting of projects/organizations, multi-modal databases and toolkits, and take the information object in Frontiers in Neuroscience as a example input. Meanwhile, we developed and open sourced the query tool, PDT_fninf , so that researche…
PyPi Package of Self-Organizing Recurrent Neural Networks (SORN) and Neuro-robotics using OpenAI Gym
Deep-Learning Based Automated Neuron Reconstruction from 3D Microscopy Images Using Synthetic Training Images
This project focus on sleep spindles searching in filtered EEG signal.
Generalized Correspondence LDA (Python implementation). Deprecated in favor of NiMARE.
Tools for creating full TVB models from individual anatomical scans
A package to export events using log files from presentation software.
Python GUI to Map fMRI ICA probability/t-value maps to known networks (e.g. resting state networks).
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