Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations

Hodgkin and Huxley neuron model using Simulink and MATLAB. The Hodgkin and Huxley model is a mathematical representation of the electrical activity in a neuron, capturing the dynamics of ion channels and membrane potential.

Two point neuron (model of neocortical pyramidal neuron).

Locating neurons in the coronal plane of the mouse brain through segmentation in MATLAB. The goal of this project is to assist in the analysis of neural structures by automating the detection and localization of neurons in brain images.

Large-scale thalamocortical network model for simulating physiological and paroxysmal brain rhythms: version 1

Mathematical modelling of microglial cells for the neuroscience community

Large-scale thalamocortical network model for simulating physiological and paroxysmal brain rhythms: version 2

Code and data used in Bordt et al (2019) Synaptic inputs and connectivity of a sparsely branched ganglion cell in rabbit retina

T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It was published in (and should be cited this way): Beining M, Mongiat, LA, Schwarzacher SW, Cuntz H, Jedlicka P: T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born denta…