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Oct 13, 2021 - Python
ngs-analysis
Here are 194 public repositories matching this topic...
Diagnostic performance of HPV-DeepSeek, a hybrid capture whole genome sequencing liquid biopsy for HPV-associated cancers
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Nov 9, 2023
Python scripts for design of 5'/3' RACE-based NGS panels, and the following data analysis
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Sep 6, 2023 - Python
Análisis genómicos y transcriptómicos con plataforma NGS
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Feb 18, 2024 - HTML
Leveraging WES short reads for PAN-EXOME creation and analysis.
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Feb 1, 2024 - WDL
Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).
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Sep 24, 2023 - Python
Detection of unknown genetically modified organisms
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Apr 5, 2020 - Python
Coverage graph creator from BAM files (included in the SSV-Conta package)
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Feb 7, 2020 - Python
Webserver for storage [and analysis] of NGS-based HIVDR testing data
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Dec 10, 2023 - HTML
Personal blog on computational biology and pathology
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Jul 9, 2024 - SCSS
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Mar 17, 2018 - Python
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Apr 18, 2023
GUI coupled to a local database that centralize all NGS variant data and annotations, and to provide powerful filtering tools that are easily accessible to the biologist.
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Jul 1, 2024 - Java
Mining CNV based on rice Nipponbare genome using resequencing data.
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Jan 6, 2023 - Perl
Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.
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Sep 21, 2023 - Python
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
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Jul 3, 2024 - Python
A python package storing different tools for different NGS operations
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Sep 13, 2021 - HTML
TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time
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Feb 7, 2024 - Python
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