Source ontology files for the Gene Ontology
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Updated
Sep 25, 2024 - Makefile
The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants follow and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Operations Committee with Editorial, Technical and Outreach working groups.
Source ontology files for the Gene Ontology
An ontology of cell types
Mondo Disease Ontology
The home of the Drosophila anatomy ontology
C. elegans Gross Anatomy Ontology
Repository for the Human Disease Ontology.
OBO Organized Knowledge: Training materials for becoming an OBO engineer
LLM-based ontological extraction tools, including SPIRES
An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies. Formerly called the Ontology of Plant Stress
Schema and generated objects for biolink data model and upper ontology
Standard terms for annotating mammalian phenotypic data
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
Terms for annotation of vertebrate trait data
LLM-driven curation assist tool (pre-alpha)
An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
My personal website, served at https://cthoyt.com
Released 2003