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overlapping-genes

Here are 5 public repositories matching this topic...

OLGenie

chasewnelson / OLGenie

Program for estimating dN/dS in overlapping genes (OLGs)

perl selection overlapping dnds-estimation molecular-evolution positive-selection dnds natural-selection nei-gojobori overlapping-genes purifying-selection neutral-evolution

Updated Dec 2, 2022
Perl

SARS-CoV-2-ORF3d

chasewnelson / SARS-CoV-2-ORF3d

Supplementary scripts for Nelson et al. (2020) paper on ORF3d

python r perl biopython overlapping-genes within-host covid-19 sars-cov-2 orf3d olgenie snpgenie between-host

Updated Nov 5, 2020
R

gabriel-ferreras / ChipSeqPipeline

Bash, SGE and R pipeline for Chip-Seq data processing and analysis.

chip-seq peak overlapping-genes transcript-factor kegg-terms

Updated Feb 19, 2021
R

gabriel-ferreras / ChipSeqPipelineNoSGE

Bash and R pipeline for Chip-Seq data processing and analysis.

chip-seq peak overlapping-genes go-terms transcript-factor kegg-terms

Updated Feb 19, 2021
R

chiarabales / geneset_SV

Reference implementation of the paper Redundancy-aware unsupervised ranking based on game theory - application to gene enrichment analysis

gene-sets game-theory pathways overlapping-genes shapley-values unsupervised-feature-selection redundancy-reduction

Updated Dec 23, 2022
Python

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