Long read based human genomic structural variation detection with cuteSV

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).

A workflow for processing CCS reads of AMF to ASVs using DADA2

A set of tootkit for dealing with COI amplicons using Pacbio sequencing platform

a streamlit application for graphical analyisis of pacbiohifi reads

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

pacbiohifi read analyzer using recursion

profiling pacbiokmers and filtering pacbio kmers

awk utilites for anlyzing pacbiohifi genomes and reads

extracting specific motifs from pacbio and oxford nanopore long reads.

kmer profile for pacbiohifi reads in julia language

De novo repeat inference from long reads

SMP: A Salmonella Methylation analysis Pipeline

pacbiohifi view using awk

ruby gem for analyzing pacbiohifi genomes and reads