Long read based human genomic structural variation detection with cuteSV
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Updated
May 31, 2024 - Python
Long read based human genomic structural variation detection with cuteSV
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
A workflow for processing CCS reads of AMF to ASVs using DADA2
A set of tootkit for dealing with COI amplicons using Pacbio sequencing platform
De novo repeat inference from long reads
SMP: A Salmonella Methylation analysis Pipeline
pacbiohifi sequencing genomes analysis using the verkko, hifiasm and the genomeasm4pg.
a pacbiohifi read check for the quick view of the read types.
a streamlit component for reading and plotting the PacBioHiFi sequencing reads.
code getter for illumina, pacbio, oxford long reads alignments.
a nextflow pacbiohifi for the genome assembly from the pacbiohifi. It also includes supports for the visualization and genome assessment.
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
a pacbiohifi analyzer for pacbiohifi reads from sequence analysis to the graph alignments.
lastz alignment sorting and plotting the alignment length
awk code for pacbiohifi alignments from verkko and other genome assembly methods
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