A small example to test DENTIST's workflow
-
Updated
Sep 27, 2022 - Python
A small example to test DENTIST's workflow
Target site duplication assessment from alignment file and genomic location of insertion sites.
pacbio or oxford nanopore long reads repeat coverage estimation.
Adapter+Barcode trimming from Pacbio HiFi reads
Retro-ingineering of PacBio's modelling of IPD (RSII, Sequel I, Sequel II v2)
A Snakemake pipeline to go from raw .subreads.bam PacBio Iso-Seq to assembled mRNA isoforms (FASTA format)
A toolkit to harmonize and filter structural variations across methods and samples.
Tracer is a codebase for prototyping the use of a deep LSTM model for translating SMRT sequencing traces to DNA string sequences (or "base calling").
Mitochondrial Long-read Iterative Assembly
A gap filling tool for genomes that utilizes PacBio long reads
A pipeline for computing overlaps between long reads based on theoretical properties of Lyndon factorizations.
Lightweight bioinformatics pipeline for microbial genome recovery
Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
SARS-CoV-2 analysis using PacBio long reads
Improving long-read barcode-variant mapping using multiple sequence alignment.
Coronavirus (SARS-Cov-2) sequencing analysis
Quality control plotting for long reads
simplified cellranger for long-read data
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
Add a description, image, and links to the pacbio topic page so that developers can more easily learn about it.
To associate your repository with the pacbio topic, visit your repo's landing page and select "manage topics."