Visualization of Functional Enrichment Result
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Updated
May 15, 2024 - R
Visualization of Functional Enrichment Result
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
MSigDB gene sets for multiple organisms in a tidy data format
R package for pathway analysis in scRNA-seq data
An R package for multi-dimensional pathway enrichment analysis
Package to calculate functional similarity between genes https://biocor.llrs.dev
Flexible gene set enrichment analysis
An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
GRAPH Interaction from pathway Topological Environment
Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings
Use Jaccard index and constituent genes to identify groups of similar pathways
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
Population-based pathway analysis of SNP-SNP coevolution
PAVER: Pathway Analysis Visualization with Embedding Representations
A knowledge-based T2-statistic to perform pathway analysis for quantitative proteomic data.
Pathway enrichment analysis / visualize for Single Cell Data
Investigating the use of hierarchical modelling for pathway analyses
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