Snakemake pipeline for searching genomic sequences for those that encode proteins containing domains of choice

The script will generate and display the phylogeny tree, with MSA and domain distribution labels assigned to the tree leaves.

PFAM's micro service to assist to Mistic2.

PARS is a python package for browsing and downloading files deposed in Pfam and Rfam databases (e.g. sequences, alignments, hmm). It has implemented classes dedicated to Pfam data like: PfamFamily or PfamClan. PARS is compatible with Biopython modules, but also is extended by HMMER wrapper which enables convenient usage of downloaded HMM files. …

Set of tools for protein sequence enrichment and protein domain finding

A Bio2BEL package for PFAM (https://pfam.xfam.org/)

📦 A Command Line Tool for downloading protein structures, sequences and MSAs

Imports Pfam into Google BigQuery