The BioJulia package for working with phylogenetic trees and geneologies.
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Updated
Jun 22, 2018 - Julia
The BioJulia package for working with phylogenetic trees and geneologies.
Some phylogenetic tree visualization routines
Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC
Phylogenetic trees in Julia
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
Bayesian estimation of conditional clade distributions etc.
Biological Sequence Substitution Models for Julia
Tutorial to infer phylogenetic networks from multilocus data with SNaQ in PhyloNetworks
Newick formatted (phylogenetic) trees
(Hierarchical) Phylogenetic Models in Julia
Bachelor thesis project regarding continuous approximations of discrete phylogenetic migration models.
Phylogenetic tree tables and other phylogenetic utilities. (Functions include: prt(tr) and other utilities. Also includes the PhyloNetworks tree object/reader/writer, with minimal dependencies.)
Phylogenetic biogeography SSE models for large state spaces
Tools for handling rooted phylogenetic or genealogic trees with Julia.
Simple phylogenetic trees in Julia to work with Diversity.jl - https://github.com/EcoJulia/Diversity.jl
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