An analysis and visualization platform for 'omics data
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Updated
Jul 19, 2024 - Python
An analysis and visualization platform for 'omics data
PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
Hybridization detection using phylogenetic invariants
A tool for drawing ANI clustermap between all-vs-all microbial genomes
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
NGSphy: phylogenomic simulation of next-generation sequencing data
Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.
A tool for plotting CAFE5 gene family expansion/contraction result
A Phylogenomic protein function prediction method based on weighting evolutionary distances
A tool for divide-and-conquer tree estimation via a shared distance matrix
A Snakemake-workflow to sample taxa from sequence databases based on taxonomical or phylogenetic information
Species tree estimation from multi-copy gene trees
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