R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
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Updated
Feb 11, 2024 - TeX
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale
Zhian Kamvar's Ph. D. dissertation from Oregon State University
In this article, we introduce Mycorrhiza, a machine learning approach for the genotype assignment problem. Our algorithm makes use of phylogenetic networks to engineer features that encode the evolutionary relationships among samples.
Repo for Ram, Altenberg, Liberman, Feldman (2018) "Generation of Variation and a Modified Mean Fitness Principle: Necessity is the Mother of Genetic Invention", Theoretical Population Biology.
The LaTeX source for my PhD Thesis, the viva for which took place in September, 2016.
Poster for the Schrodinger Scholarship event 2020
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