Genomic Data Retrieval with R

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities

Genome wide orthology inference and dNdS estimation

Matrix dissimilarity from the differences of Moments and sparsity

Tools for Batch Effects Diagnostics and Correction

Construction, quantification, and visualization of proteoform families

An alignment-independent tool for the study of pathogen sequence diversity

Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.

Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.

Scripts used for the phosho data analysis

Sharing some useful biological data that I generated during my PhD.

Blast wrapper using snakemake to generate correspondance between a list of transcript or protein and some proteomes.

Hydrophobicity of the human proteome

It assigns the phosphorylation site in protein

This is now the main repository. A few older issues are still tracked on gitlab for reference.

This repository is to store the used dataset for publications related to UNIQmin

CWL descriptions for FragPipe Proteomics Pipline