Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
Genomic Data Retrieval with R
Hydrophobicity of the human proteome
Matrix dissimilarity from the differences of Moments and sparsity
Genome wide orthology inference and dNdS estimation
This is now the main repository. A few older issues are still tracked on gitlab for reference.
This repository is to store the used dataset for publications related to UNIQmin
Construction, quantification, and visualization of proteoform families
Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.
An alignment-independent tool for the study of pathogen sequence diversity
Tools for Batch Effects Diagnostics and Correction
Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.
Blast wrapper using snakemake to generate correspondance between a list of transcript or protein and some proteomes.
It assigns the phosphorylation site in protein
CWL descriptions for FragPipe Proteomics Pipline
Scripts used for the phosho data analysis
Sharing some useful biological data that I generated during my PhD.
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