Rapid standardisation and quality control of GWAS or QTL summary statistics

QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

Mixed models @lme4 + custom covariances + parameter constraints

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

Create LocusZoom-style plots in R.

QTL mapping with binmap data

Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).

R package for random-effect multiple QTL mapping in autopolyploids

R interface to SOLAR

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

Kernelized HAplotype-based MIXed model association mapping (KHAMIX)

GUI for binQTL

Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest

QTL Bayesian Interval Mapping

The COWAS (co-expression-wide association study) method identifies pairs of co-expressed proteins that are associated with disease.

echoverse module: Statistical and functional fine-mapping functions.

This is a fork from qqman package

We are investigating the genetic architecture of decayed sexual traits in asexual females of the parasitoid wasp Asobara japonia. In particular, we conduct QTL analysis for the female functional virginity trait, which referes to asexual females resisting to mate or not fertilizing eggs after mating. In the case of A. japonica, asexual females re…

Scripts of Final Master Project