Automated RNA-seq pipeline for lncRNA indentification
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Updated
Nov 6, 2023 - Shell
Automated RNA-seq pipeline for lncRNA indentification
Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.
Tool to identify chimeric events from RNA-Seq data
RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
In development scripts for EvolOMICs group's NGS Data Analysis Pipeline
In this repository, I try to replicate the results of Rodriguez2017
This repository contains all the scripts necessary to perform RNA-Seq analysis on HTC CRC Pitt.
RNA Sequencing pipeline on Cardiff University Hawk using NF-Core with example data.
An analysis script routine to assess if samples that were prepared with Lexogen's barcoded targeted QuantSeq Flex library preparation contain copies of the SARS-CoV-2 virus.
Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.
This project uses an workflow pipeline to generate map and assemble RNAseq reads to a reference genome. Furthermore, we generate counts data and identify differentially expressed genes from 2 conditions.
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