Computational biology/bioinformatics workflows, codes, and concept notes on NGS data
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Updated
Jul 15, 2024 - HTML
Computational biology/bioinformatics workflows, codes, and concept notes on NGS data
habenulaPilot project code repository
This repository contains materials I put together for Champagne/Curley lab meeting on 06/25/2020: Primer for tag-based RNA seq
Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
Differential Gene Expression analysis in R using DESeq2
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
Cell type-specific eQTL mapping
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.
Data science project work with genomics/biological data
An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
Provides dplyr and other functions for the SummarizedExperiment class
Transcriptional variant verification to validate predicted variants from genomic data in expressed transcripts
Project for the Transcriptomic course of "Bioinformatics for Computational Genomics" MSc
This repository for analysing lncRNAs from RNA-seq anthracycline data (HeCaToS project)
An R package to plot interactive three-way differential expression analysis
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