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short-reads

Here are 2 public repositories matching this topic...

CMU-SAFARI / GateSeeder

GateSeeder is the first near-memory CPU-FPGA co-design for alleviating both the compute-bound and memory-bound bottlenecks in short and long-read mapping. GateSeeder outperforms Minimap2 by up to 40.3×, 4.8×, and 2.3× when mapping real ONT, HiFi, and Illumina reads, respectively.

bioinformatics fpga genomics indexing seeding hbm sequence-alignment read-mapping long-reads minimap2 minimizers short-reads genome-on-diet

Updated Oct 3, 2023
C

guillaume-gricourt / HmnRandomRead

A sequence-read simulator program for NGS

bioinformatics quality-control next-generation-sequencing illumina in-silico short-reads

Updated Apr 29, 2024
C

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