single-cell-genomics
Here are 23 public repositories matching this topic...
Spatial Single Cell Analysis in Python
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May 27, 2024 - Python
Inference of Disease Progressive Level in Single-Cell Data
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May 24, 2024 - Python
Deep probabilistic analysis of single-cell and spatial omics data
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May 27, 2024 - Python
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
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May 22, 2024 - Python
Single cell Perturbations - Analysis of Differential gene Expression
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May 17, 2024 - Python
SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries
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May 9, 2024 - Python
𝒫robabilistic modeling of RNA velocity ⬱
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May 16, 2024 - Python
CellRank: dynamics from multi-view single-cell data
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Apr 23, 2024 - Python
The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of drugs, learns interpretable embeddings, estimates dose-response curves, and provides uncertainty estimates.
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Mar 31, 2024 - Python
Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).
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Jan 12, 2024 - Python
Workflow for processing single-cell sortChIC data
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Jan 4, 2024 - Python
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
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Dec 11, 2023 - Python
A tool for detecting TE insertions and evaluating the insertion rate (under development).
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Oct 15, 2023 - Python
Single cell perturbation prediction
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Oct 1, 2023 - Python
A deep learning architecture for robust inference and accurate prediction of cellular dynamics
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Aug 14, 2023 - Python
Pipeline to analyze Indrops V3 data using STARsolo
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Jun 6, 2023 - Python
Visualize cancer genomes with FAIR single-cell RNA-seq data
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Jan 5, 2023 - Python
SCGV is an interactive graphical tool for single-cell genomics data, with emphasis on single-cell genomics of cancer
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Mar 23, 2022 - Python
Single-Cell Data Science
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Nov 30, 2020 - Python
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