CUT&RUN and CUT&Tag data processing and analysis
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Updated
Feb 18, 2023 - Shell
CUT&RUN and CUT&Tag data processing and analysis
Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq pipeline.
Single Cell Allele-Specific Analysis - Containerized tool for genotyping, phasing, mapping bias correction, and generation of single cell allele-specific counts
Downloading and processing pipelines used for single cell gene expression assays of human tumor biopsies
Single Cell Journalling
A suggested workflow, and accompanying scripts, to assemble Single Amplified Genomes (SAGs) from MDA derived Hi/MiSeq (Overlapped) Paired-End Illumina Libraries.
Salmon Alevin (single cell) quantification wrapper module for GenePattern.
V(D)J T Cell and B Cell Analysis with cellranger vdj
Download fastqs or supplementary files from GEO and upload to hca-util bucket
10x Cell Ranger Docker Image
Add a description, image, and links to the single-cell topic page so that developers can more easily learn about it.
To associate your repository with the single-cell topic, visit your repo's landing page and select "manage topics."