Explore microbial contamination in human whole-genome shotgun data sets, using sourmash

Use sourmash to sketch the human genome (hg38), incl all unmapped chromosomes.

tools for sourmash-based pangenome analyses

Tools and scripts for studying the GTDB taxonomy with sourmash

Break sourmash sketches into many chunks for better indexing

Example workflows and useful scripts for building your own sourmash databases

Storing sourmash signatures/sketches in a SQLite database

Download one or more NCBI genomes; includes sourmash plugin.

Project template for sourmash-based characterization of genomes and metagenomes

build sigs and sbt from euk samples

Sketch many files at once

template for building sourmash plugins

venn diagrams for sourmash sketches! (DEPRECATED)

Add colors representing categories in sourmash compare plots.

Greedy iterative clustering of genomes using sourmash

Blazingly fast SRA-scale sequence analysis & QC

A simple JSON RPC client/server setup for sourmash databases

parallel search of many sourmash databases, via snakemake