Convert SV VCFs to BED, a wrapper for bcftools query

Finding structural variations in a genome after comparison with a reference genome.

Predict mechanism underlying structural variants

Code used to discover structural variants, SNP, Indels that were applied to rare variant analysis

Simulate ecDNA structures with user-specified properties.

Some useful scripts to process structural variant calls

A suite of Python-based command line tools to visualize structural variation

Identifies structural variant (SV) sites shared between two VCF files.

detection of rings on acrocentric chromosomes using short reads sequencing

A toolkit to harmonize and filter structural variations across methods and samples.

A tool to find reads supporting/opposing structural variant breakpoints

Processing and annotation of somatic structural variants

Structural variant calling and functional annotation in five mice lines selected for specific traits and a control line.

Alignment frontend for AliTV

population structural variant calling with smoove

Hidden Markov Model based Copy number caller

Snakemake pipeline for SV discovery and analysis

Fast and Accurate Approach of Structural Variations Detection for Short DNA fragments

CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology

SV genotyper for long reads with a variation graph