Python implementation for René Thomas's Framework
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Updated
Oct 23, 2021 - Python
Python implementation for René Thomas's Framework
Supplementary Material for Multistate Control Paper
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
A Bio2BEL package for converting InterPro to BEL
Variational Gradient Matching for Dynamical Systems
Systems Biology & Machine Learning Scripts
The repository contains the code used to perform a rigorious quantitative analysis of enzyme substrate binding.
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Nakakuki, T. et al. Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics. Cell 141, 884–896 (2010).
Simple Python script to predict protein based on the DNA sequence.
SCAI miRNA text mining corpra to BEL
PAR2 Activation and calcium signaling Reaction Model in PySB
Some tools for performing Monte Carlo simulations of chemical reaction networks in my research
A network inference method based on a simple response logic with minimal presumptions
Jupyter notebooks for BFG-PCA related simulation and analysis.
Quality control tool for the BioModels repository of biochemical models
scRNA2BoNI - A general framwork to infer Boolean networks from scRNAseq data.
A Bio2BEL package for converting Entrez and HomoloGene to BEL
A Bio2BEL package for converting BMKS-react to BEL
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