Phylogeny and classification of Azolla filiculoides MYB genes
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Updated
Feb 26, 2021 - HTML
Phylogeny and classification of Azolla filiculoides MYB genes
The Soybean Genomic Variations Explorer (Soybean GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
The Genomic Variations Explorer (GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
miRinGO: Prediction of GO terms indirectly targeted by human microRNAs
target: An R Package to Predict Combined Function of Transcription Factors (workflow article)
All code generated for Loupe et al. 2023
Motif Visualisation and multi-omic integration tool
R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.
Using deep neural networks to locate FOX transcription factors in genomes
Comprehensive human PPI network and TF network
Anchor Residue Identification for any TF
Django-based web application to explore and analyse Human Transcription Factors
Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.
Motif discovery for DNA sequences using multiobjective optimization and genetic programming.
Prediction of the binding sites of multiple transcription factors in a whole genome
Chiang, S., Shinohara, H., Huang, J. H., Tsai, H. K. & Okada, M. Inferring the transcriptional regulatory mechanism of signal-dependent gene expression via an integrative computational approach. FEBS Lett. (2020).
Master's project - identification of trans-eQTL clusters resulting from changes in transcription factor binding site preference.
CRAFT: Cellular Reprogramming Analysis with Integrated Framework and Mechanistic Insight
Genomic analysis of decreased DNA repair at TF-binding sites.
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