variant-calling
Here are 22 public repositories matching this topic...
A nextflow variant benchmarking pipeline - premature
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May 24, 2024 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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May 24, 2024 - Nextflow
Flujos de trabajos desarrollados y automatizados en el INMEGEN para el procesamiento de datos genómicos y transcriptómicos.
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May 17, 2024 - Nextflow
Pipeline for SNP Calling Created in Nextflow management system for purposesof testing the advantages of managed systems vs native applications in variant calling. The paper created and published one day is titled "NextFlow vs. plain Bash: Different Approaches to the Parallelisation of SNP Calling from the Whole Genome Sequence Data"
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May 14, 2024 - Nextflow
Assembly and intrahost/low-frequency variant calling for viral samples
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May 10, 2024 - Nextflow
Call and score variants from WGS/WES of rare disease patients.
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May 24, 2024 - Nextflow
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
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May 21, 2024 - Nextflow
Nextflow pipeline for plasmodium SNP calling
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Mar 8, 2024 - Nextflow
Perform read mapping and variant calling using snippy
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Feb 22, 2024 - Nextflow
NextFlow pipeline for mitochondria sequence reconstruction
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Jan 2, 2024 - Nextflow
Pipeline to perform alignment & variant calling on whole-genome sequence data
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Dec 22, 2023 - Nextflow
Variant Calling Pipeline Using GATK4 and Nextflow
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Feb 16, 2023 - Nextflow
GATK RNA-Seq Variant Calling in Nextflow
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Dec 14, 2022 - Nextflow
Strelka2 nextflow pipeline
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Oct 25, 2022 - Nextflow
Please consider using/contributing to https://github.com/nf-core/sarek
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Jul 13, 2021 - Nextflow
a better freebayes-parallel
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Jan 5, 2021 - Nextflow
Assembly and intrahost / low-frequency variant calling for viral samples
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Feb 12, 2020 - Nextflow
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