2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)
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Updated
Mar 22, 2020 - PHP
2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
Infectious Disease Sequencing Platform
Unpivoted and cleaned data sets on the COVID-19 pandemic
VAPiD: Viral Annotation and Identification Pipeline
Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences".
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
Reconstruction and analysis of viral and host genomes at multi-organ level
genetic distance plotting for recombination events analysis
A software to detect virome-wide integrations
The art of decorating a phage genome by gluing feature cutouts into it.
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)
Dr. Buqing Yi
Data and code related to the Janies Lab Variant Dashboard for SARS-CoV-2
Imputing the mammalian virome with the LF-SVD model
These are scripts relevant to the study of sapovirus intrahost and interhost genome evolution. The scripts are relevant to (1) the mining of inter-genotype evolution, (2) within and between-host sapovirus genome evolutionary analyses, (3) sapovirus genetic divergence and diversity.
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