VMD plugin to swap coordinates between atoms in a molecule

VMD plugin for rmsd calculation and fitting of molecular structures

interactive Trajectory Comparison

Simple MMD(PMD/VMD) loader in C++

Rendering 3D-Rashba-Pockets with the help of Julia and VMD

Convert vmd file to csv and used for Unity Mecanim,such as morph,motion

Dockerized VMD images, equipped with OpenGL rendering and CUDA Acceleration

Kapakayala Anji Babu , IIT Kanpur, India.

VMD startup script adding hotkey for the OpenGL window and enhancing data analysis

meta-data datasource for OpenBSD vmd(8)

VMD plugin to calculate and visualize clusters of conformations for a trajectory

❄️ Sublime Text 3 plugin for vmd

VMD-Lifting is a fork of 'Lifting from the Deep' that outputs estimated 3D pose data to a VMD file

A few useful vmd trajectory analysis scripts

Simple script for plotting .agr (Grace) files created with VMD (Visual Molecular Dynamics). Allows export to csv/svg/png.

VMD plug-in for building a peptide ab initio from backbone torsion angles or secondary structure

Octane in a water box under CHARMM36 forcefield

Signal processing method and algorithm library

Colorblind-friendly, perceptually uniform palettes for vmd

Research on similarities and differences between COVID-19 and Influenza type A using VMD.