Type annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)
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Updated
Sep 26, 2024 - Python
Type annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)
Merge MAO datasets observed with NRO 45m telescope into a single Zarr file
Large-scale cell segmentation with cellpose.
This repository enables one to spin-up a FastAPI/Xpublish server from an Intake or STAC catalog.
Python code that I used in my blog posts on the Zarr file format.
Timings for various Dandi Zarr checksum implementations
Cookiecutter for Zarr store implementations
zarrtraj MDAKit for @MDAnalysis
Support for loading and dumping N-dimensional arrays in LinkML.
Datastore for Tensors based on Xarray and Zarr
Collection of reference files of data archived on 📼 at DKRZ
Utility for loading CellMap data for machine learning training, utilizing PyTorch, TensorStore, Xarray, and PyDantic.
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
Distributed processing with NumPy and Zarr
Python library allowing to manipulate data splited into a collection of groups stored in Zarr format.
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