Skip to content

swarm 2.1.0

Choose a tag to compare

View all tags
@torognes torognes released this 24 Mar 15:23
· 3479 commits to master since this release
v2.1.0
6802c71

Version 2.1.0 marks the first official release of swarm 2 with a number of improvements and new features:

  • built-in breaking phase now performed automatically
  • built-in strict dereplication (with d = 0)
  • possibility to output OTU representatives in fasta format (option -w)
  • fast algorithm now used by default for d = 1 (linear complexity)
  • a new option called fastidious that refines d = 1 results and reduces the number of small OTUs
Assets 4
Loading