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tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work.
Tools for managing tranSMART's database
Functional tests for tranSMART
blend4j-plugin is a grails plugin to access galaxy.
A R statistical analysis module plugin for tranSMART
Connector to link tranSMART to an XNAT server
HTTP available tranSMART RESTful API
The tranSMART plugin Metacore
Plink integration for tranSMART
Contains the Grails domain declarations of the legacy transmart schema
Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!
The transmart (and grails) plugin that contains the folder-management elements.
tranSMART ETL pipelines and configurations
A collection of scripts for managing all the tranSMART Foundation repositories
The transmart (and grails) plugin that contains the GWAS elements.
A R module with packaged functions to query the tranSMART database directly
Boilerplate code for tranSMART UI
Genome Wide Association Study Visualizer (from Pfizer)
mydas is an easy-to-extend Java DAS server framework.
ICE tool for transmart ETL (formerly FCL4tranSMART)
tranSMART pipeline alternative to ETL, using Spring Batch
This contains code for a prototype of "federation"
external configuration files for tranSMART application
Most used topics