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πŸ›‘οΈ fix: shared substrate-health pre-flight for L5 + A/B (fail-fast on broken MCP / auth / plugin)#161

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Apr 27, 2026
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πŸ›‘οΈ fix: shared substrate-health pre-flight for L5 + A/B (fail-fast on broken MCP / auth / plugin)#161
ZaxShen merged 1 commit into
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@ZaxShen ZaxShen commented Apr 27, 2026

User direction: 'During testing, either local or GH, MCP dies, schema issues, or any thing from L0 to L4 must raise an error to stop the test immediately. It shouldn't move forward and waste our time and tokens.'

What this adds

  • NEW tests/dogfood/lib/smoke-helpers.sh β€” three substrate checks + one orchestrator (l6_pre_flight_or_abort):

    Check Catches
    l6_smoke_mcp missing dist/index.js, missing node_modules, schema parse errors, MCP startup exceptions
    l6_smoke_claude_auth token revoked, network down, claude binary broken
    l6_smoke_claude_plugin_load plugin tree breakage that doesn't surface in MCP-only smoke
  • run-ab.sh: pre-flight runs first; per-arm smoke runs after each arm_plugin is built.

  • run-l5.sh: replaces the soft L6 light failed β€” claude -p produced 0 trajectory rows in CI; diagnose headless modeΒ #116 diagnostic block (print-only) with hard-abort l6_pre_flight_or_abort.

  • ab-helpers.sh: backward-compat alias kept.

Why

The bug from PR #160 produced 10 silent 0-byte trajectory.db files + ~$2 wasted before the report-step revealed empty results. Pre-flight aborts in <30s with a clear error β€” no token spend, no false-failure report.

Same fail-fast philosophy as verify-cc-auth (catches broken token before Docker build). Now extended to the entire substrate.

Verification

bash tests/run-all.sh β†’ All test layers passed (L1 + L2 + L3)

… broken MCP / auth / plugin)

User direction: 'During testing, either local or GH, MCP dies, schema
issues, or any thing from L0 to L4 must raise an error to stop the test
immediately. It shouldn't move forward and waste our time and tokens.'

## Refactor

- NEW `tests/dogfood/lib/smoke-helpers.sh` β€” three substrate checks +
  one orchestrator (l6_pre_flight_or_abort) that runs all three and
  exits the calling script on any failure:
  1. l6_smoke_mcp: spawns the MCP server in a given plugin dir + sends
     JSON-RPC initialize + tools/list. Catches missing dist/index.js,
     missing node_modules, schema parse errors, any startup exception.
  2. l6_smoke_claude_auth: claude -p basic call. Catches token revoked,
     network down, claude binary broken.
  3. l6_smoke_claude_plugin_load: claude --plugin-dir basic call.
     Catches plugin tree breakage that doesn't surface in MCP-only smoke.

## Wiring

- run-ab.sh: l6_pre_flight_or_abort runs first (on PLUGIN_ROOT), then
  per-arm MCP smoke runs after each arm_plugin is built. Existing
  per-arm logic kept; was redundant after l6_pre_flight but catches
  arm-specific overlay bugs.
- run-l5.sh: replaces the soft #116 diagnostic block with
  l6_pre_flight_or_abort. Old diagnostic was print-only; new is
  hard-abort.
- ab-helpers.sh: l6_smoke_arm_plugin kept as a backward-compat alias
  forwarding to l6_smoke_mcp.

## Why this matters

A 0-byte trajectory.db pattern (the bug from PR #160) silently wasted
~$2 of tokens before the report step revealed the empty results. With
pre-flight, the same failure mode aborts in <30s with a clear error
message β€” no token spend, no false-failure report to debug.

Same fail-fast philosophy as verify-cc-auth (auth check before Docker
build). Now extended to the entire substrate.
@ZaxShen ZaxShen force-pushed the fix/test-runners-mcp-pre-flight branch from b1e5764 to c809f36 Compare April 27, 2026 04:01
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ZaxShen commented Apr 27, 2026

Rebased onto current dev (post #162 merge). Also renamed all l6_* helpers in this PR's touched files to l5_* to stay self-consistent with #163 (no-op behavior, just naming alignment with the post-#118 layer rename).

After this and #163 land, whichever lands first will trigger one rebase on the other; the diffs don't structurally conflict.

@ZaxShen ZaxShen merged commit f247912 into dev Apr 27, 2026
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ZaxShen added a commit that referenced this pull request Apr 27, 2026
* πŸ§ͺ feat(#131 A): eval_results A/B columns β€” arm + scenario (#154)

PR A of 3 implementing #131 (A/B prompt-eval framework).

## Schema additions

- eval_results.arm TEXT NOT NULL DEFAULT 'control' β€” which experimental
  arm produced this row. Default 'control' so existing single-arm L5
  dogfood runs continue to work unchanged.
- eval_results.scenario TEXT β€” stable identifier for the A/B scenario,
  e.g. 'claude-md-slim' or 'hybrid-d-vs-lazy'. Nullable for backward
  compat with non-A/B runs.

## Migration logic (db.ts)

migrateEvalResultsAbColumns(): same PRAGMA-check + ALTER TABLE pattern
as migrateFileRegistryCodebaseMemory (#45). SQLite ALTER ADD COLUMN
with literal DEFAULT applies the default to existing rows.

## Test additions

- New test 'eval_results has the A/B columns (#131) on a fresh DB' β€”
  asserts arm is NOT NULL with 'control' default + scenario is nullable
- Updated existing 'eval_results table exists with v2 multi-scorer
  schema (#110)' to expect arm + scenario in the column list

## Verification

bash tests/run-all.sh β†’ All test layers passed (L1 + L2 + L3)

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>

* πŸ§ͺ feat(#131 B): A/B runner + helpers + stats + worked-example scenario (#155)

PR B of 3 implementing #131. Schema (PR #154) already in dev.

## tests/dogfood/lib/ab-helpers.sh

- l6_make_arm_plugin: copies $PLUGIN_ROOT to a temp dir, overlays
  arm-specific overrides on top (rsync). Returns the temp path.
- l6_run_arm: runs claude -p against the arm-specific plugin tree
  (--plugin-dir <temp>). Same headless flags as l6_run_claude.
- l6_score_with_arm: runs the existing scorers + UPDATE eval_results
  to tag rows with arm + scenario for the run_id just written. Cheapest
  way to retag without rewriting the scorer functions.
- l6_cleanup_arm_plugin: removes the temp arm plugin (skipped when
  L5_KEEP_ARTIFACTS=1).

## tests/dogfood/run-ab.sh

Takes scenario name (e.g. 'example-claude-md-slim'). Loads scenario.json
(flow + prompt + arms list). Runs N pairs (default 5). Each pair: setup
scratch + make-arm-plugin + run-arm + score-with-arm for every arm.
Run ID format: ab-<scenario>-pair<N>-<arm>-<timestamp>.

## tests/dogfood/scripts/ab-report.sh

Reads eval_results for a scenario. Prints per-arm Γ— per-scorer pass-rate
table. Computes chi-squared (2x2 contingency, df=1) between the first
two arms for each scorer. Critical χ² values: 3.841 (p<0.05), 6.635
(p<0.01). Pure awk math β€” no scipy dep.

## Worked example: example-claude-md-slim

Scenario testing the plugin's current slim CLAUDE.md (~150 lines) vs
a padded variant (~300 lines with rationale + examples) on the
95-anonymous-cold-restart flow. Uses the simplest flow with a clean
outcome scorer. NOT a real-world hypothesis β€” proves the framework
works end-to-end. Real hypotheses ship in #153.

## Verification

bash tests/run-all.sh β†’ All test layers passed (L1 + L2 + L3)

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>

* πŸ“ docs(#131 C): wire A/B framework into tests/README.md + CONTRIBUTING.md + CHANGELOG (#156)

PR C of 3 implementing #131. Schema (#154) + runner (#155) already in dev.

## tests/README.md

- New row in the test pyramid table for 'A/B prompt eval (opt-in, #131)'
- New section 'When to use A/B prompt eval' β€” rule-of-thumb + run command + scenario layout pointer
- Updated 'Insertion-friendly naming' note to mention A/B sits at the heavy-opt-in tier (not in the auto-escalation chain)

## CONTRIBUTING.md

- New section 'When to write an A/B prompt-eval scenario (#131)' before the 'Writing code' section
- Rule of thumb: if you find yourself writing 'this should improve compliance' in a PR description, write a scenario instead of guessing
- Token-cost callout (~$0.50–$2 per default run)

## CHANGELOG

- New Unreleased entry summarizing the framework + pointing to #153 for real hypothesis testing

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>

* πŸ§ͺ feat(#153): 4 backfill A/B hypothesis scenarios (#157)

Ships scenario configs only β€” running is opt-in (~$2-8 tokens for full set, N=10).
Each compares current dev vs a snapshot from before the relevant doctrine PR.

## Scenarios

- **h1-claude-md-slim**: A-slim (99 lines) vs B-pre-slim (142 lines from `git show 2f5cc56^:CLAUDE.md`). Tests whether PR #126's slim was substantive or cosmetic. Flow: 02-simple-task. Headline metric: outcome pass-rate + total tokens per session.
- **h2-hybrid-d-vs-lazy**: A-hybrid-d (current Phase 4 cold-start in tmb_project-prescan) vs B-always-lazy (pre-#148 prescan, no Phase 4). Tests whether AskUserQuestion + headless_fallback machinery added value vs simpler skip. Flow: 10-codebase-memory-cold-start. Headline: trajectory_required (which arm fires the right calls).
- **h3-direct-mode-framing**: A-current-4step vs B-pre-pr139 (`git show 9f4f49e^:skills/tmb_direct-mode/SKILL.md`). Tests whether 'NEVER SKIP THIS' framing moved Direct Mode audit compliance. Flow: D-direct-mode. Headline: outcome (direct_mode_used ledger event firing rate).
- **h4-first-action-mandatory**: A-current-mandatory vs B-pre-pr139 (`git show 9f4f49e^:CLAUDE.md`). The LLM ceiling test β€” does the strongest possible imperative break the greeting-message compliance ceiling? Flow: 95-anonymous-cold-restart. Headline: trajectory_required pass rate (identity_get + issue_resume firing on @bro hi).

## Why ship configs without running

Each scenario costs ~$0.50-2 to run. Shipping configs lets the user/maintainer trigger them when budget + time align. Running all 4 is ~10-20 min of wall time + the token budget.

## After runs land

Each scenario gets an ADR under docs/trustmybot/architecture/manual/decisions/ with the verdict (variant won / lost / within noise) + recommendation (revert, ship, iterate).

## CHANGELOG

Unreleased entry added pointing to #131 (framework) + #153 (this scenario set).

## Verification

bash tests/run-all.sh β†’ All test layers passed (L1 + L2 + L3, none touch ab-scenarios)

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>

* πŸ§ͺ ci: workflow_dispatch for A/B scenarios with merged-DB report + md5/ledger inspection (#158)

Manual-trigger workflow that takes a scenario name + N pairs, runs the
A/B framework, then merges all surviving scratch trajectory DBs into a
single report DB and dumps to the action log:

- ab-report.sh output (per-arm pass-rate + chi-squared)
- file_registry rows (path + content_md5 + summary) β€” to inspect whether the #45 md5 workflow actually populated
- ledger events β€” to inspect audit trail (direct_mode_used, planning_complete, headless_fallback, etc.)

Restricted to dev/rc dispatch only (token-heavy, never PR-required).
L5_KEEP_ARTIFACTS=1 so scratch dirs survive for the report step.
Artifact retained 14d (longer than L5's 7d since A/B runs are infrequent).

Untrusted-input safety: scenario + pairs go through a job-level env block,
all subsequent run: blocks reference the env vars (not the raw input
expressions) per GH Actions injection-prevention guide.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>

* πŸ› fix(#131): A/B framework β€” symlink node_modules + scenario fixture/setup_files (#160)

* πŸ› fix(#131): A/B framework β€” symlink node_modules + scenario fixture/setup_files

Two bugs surfaced by the first h3-direct-mode-framing run (#24973707047, all 10 scratch DBs ended up 0 bytes):

## Bug 1 β€” MCP server can't start in arm_plugin

The arm_plugin (rsync'd copy of $PLUGIN_ROOT for per-arm overrides) excluded
node_modules. Without @modelcontextprotocol/sdk + better-sqlite3 deps, the
MCP server fails silently when claude tries to spawn it. Result: 0-byte
trajectory.db, bro's prescan reports 'no MCP', no eval_results rows
written β†’ empty A/B report.

Fix: keep the rsync exclude (saves 100MB+ copy) but symlink node_modules
post-rsync (both root + mcp/trajectory-server/node_modules). Node follows
symlinks normally.

## Bug 2 β€” No fixture / setup-file seeding

The runner skipped the per-flow setup that the original L5 flow's run.sh
does (l6_seed_db with a fixture, optional file creation). For h3, the
prompt 'fix the typo recieve' had no README.md with that typo β€” bro
correctly responded 'nothing to fix'.

Fix: scenario.json schema extended with optional 'fixture' (string) and
'setup_files' (array of {path, content}) fields. New helper
l6_setup_scenario_state runs both before claude. Updated all 5 scenarios
(example + 4 hypotheses) with their required fixture + setup_files.

## Verification

After this lands, re-trigger ab-scenario.yml with h3 β€” should see:
- Trajectory DBs with content
- file_registry rows after Direct Mode runs
- ledger has direct_mode_used events (or not β€” the actual H3 question)
- A/B report shows pass-rates per arm + chi-squared p-value

* πŸ›‘οΈ fix(#131): add pre-flight MCP smoke test per arm β€” fail-fast on broken arm_plugin

L4 (workflow-sim) tests MCP from $PLUGIN_ROOT, not from a stripped arm_plugin.
The A/B framework needs its OWN smoke check, since its rsync + override path
is the unique surface area where MCP-can't-start bugs appear (#131 bug-1
produced 0-byte trajectory.db Γ— 10, ~$2 wasted in tokens).

Added:

- l6_smoke_arm_plugin() β€” sends JSON-RPC initialize + tools/list to a
  spawned MCP server in the arm_plugin tree. 10s timeout. Returns 0 only
  if response contains a tools list.
- run-ab.sh pre-flight loop β€” smokes EVERY arm's plugin BEFORE the first
  claude call. If any arm's MCP fails, aborts with clear error before
  spending tokens.

Same fail-fast philosophy as verify-cc-auth (catches broken token before
the expensive Docker build).

---------

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>

* πŸ”₯ refactor(#108): remove Direct Mode β€” bro is a pure planner (#162)

The h3 A/B (5 paired runs) showed 0/5 compliance with the
ledger_log(direct_mode_used) audit step in BOTH wording arms.
Stronger imperative framing ("NEVER SKIP THIS") didn't move the
needle β€” the audit step is structurally unenforceable through
prompt discipline alone. With self-policing untrustworthy, the
safer simplification is to drop the fast-lane entirely: every code
change goes through SWE, no exceptions.

Removed:
- skills/tmb_direct-mode/
- tests/dogfood/flows/D-direct-mode/
- tests/dogfood/ab-scenarios/h3-direct-mode-framing/
- tests/workflow-sim/flow-D-direct-mode.test.mjs
- 02-simple-task no-direct-mode-event negative assertion
- direct_mode_used from ledger.event_type enum
- Flow D from FLOWS.md (quick index + section)
- tmb_direct-mode entry from FILES.md skill index

Updated CLAUDE.md / README.md / CONTRIBUTING.md / git-conventions /
docs-conventions / tests/manual/scenarios.md / tests/README.md /
tests/workflow-sim/README.md / .github/workflows/ab-scenario.yml
to drop the exception language and reword bro as planner-only.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ›‘οΈ fix: shared substrate-health pre-flight for L5 + A/B (fail-fast on broken MCP / auth / plugin) (#161)

User direction: 'During testing, either local or GH, MCP dies, schema
issues, or any thing from L0 to L4 must raise an error to stop the test
immediately. It shouldn't move forward and waste our time and tokens.'

## Refactor

- NEW `tests/dogfood/lib/smoke-helpers.sh` β€” three substrate checks +
  one orchestrator (l6_pre_flight_or_abort) that runs all three and
  exits the calling script on any failure:
  1. l6_smoke_mcp: spawns the MCP server in a given plugin dir + sends
     JSON-RPC initialize + tools/list. Catches missing dist/index.js,
     missing node_modules, schema parse errors, any startup exception.
  2. l6_smoke_claude_auth: claude -p basic call. Catches token revoked,
     network down, claude binary broken.
  3. l6_smoke_claude_plugin_load: claude --plugin-dir basic call.
     Catches plugin tree breakage that doesn't surface in MCP-only smoke.

## Wiring

- run-ab.sh: l6_pre_flight_or_abort runs first (on PLUGIN_ROOT), then
  per-arm MCP smoke runs after each arm_plugin is built. Existing
  per-arm logic kept; was redundant after l6_pre_flight but catches
  arm-specific overlay bugs.
- run-l5.sh: replaces the soft #116 diagnostic block with
  l6_pre_flight_or_abort. Old diagnostic was print-only; new is
  hard-abort.
- ab-helpers.sh: l6_smoke_arm_plugin kept as a backward-compat alias
  forwarding to l6_smoke_mcp.

## Why this matters

A 0-byte trajectory.db pattern (the bug from PR #160) silently wasted
~$2 of tokens before the report step revealed the empty results. With
pre-flight, the same failure mode aborts in <30s with a clear error
message β€” no token spend, no false-failure report to debug.

Same fail-fast philosophy as verify-cc-auth (auth check before Docker
build). Now extended to the entire substrate.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>

* πŸ”§ chore: rename l6_* helpers β†’ l5_* in dogfood test infrastructure (#163)

L6 was renamed to L5 (#118 closed the L4β†’L6 numbering gap), but the
shell-helper namespace still carried the old `l6_` prefix. Sweep:
22 files, 152 call sites/definitions, no behavior change.

Touches:
- tests/dogfood/lib/{flow-helpers,ab-helpers,scorers}.sh
- tests/dogfood/run-ab.sh
- tests/dogfood/flows/*/run.sh (17 flows)
- tests/dogfood/ab-scenarios/example-claude-md-slim/README.md

CHANGELOG history mentions of L6 are left intact (they're accurate
records of when those layers existed under that name).

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ”§ chore: bump GH Actions to v5 (Node 24) + drop CC-auth prefix check (#165)

Two CI annotations fixed:

1. **Node.js 20 deprecation** β€” `actions/checkout@v4`,
   `actions/setup-node@v4`, `actions/upload-artifact@v4` ship with the
   Node 20 runtime which is being forced off June 2 2026. Bumped all
   six call sites to v5 (Node 24 internal runtime).

2. **Token-format prefix check** β€” `.github/actions/verify-cc-auth/`
   warned on tokens that didn't start with `sk-ant-oat-` or
   `sk-ant-api-`. The smoke test (`claude -p`) is the actual gate;
   the prefix check is brittle as Anthropic adds new token types and
   adds noise without catching real failures. Dropped.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸͺ feat(#108): activation-routine UserPromptSubmit hook (DB β†’ context, deterministic) (#166)

The h4 A/B (5 paired runs Γ— 2 wording arms) showed prompt-only enforcement
of the activation routine is 0/10 in BOTH arms β€” even the strongest
imperative ("MANDATORY on every triggered message") didn't move the needle.
With prompt discipline structurally unreliable for high-frequency ops, the
honest fix is wiring it into code. DB-as-memory is one of the two core
inventions; if a hook works, we use the hook.

What the hook does:
- Triggers on UserPromptSubmit when bro mode is active (current prompt
  contains "bro" case-insensitively, OR transcript shows a prior
  "Entering bro mode." line with no later "exit bro mode").
- Reads identity.human_name + the latest open issues row directly from
  the trajectory DB (no MCP roundtrip β€” these are pure reads).
- Emits additionalContext JSON for CC's UserPromptSubmit hook protocol,
  pre-fetching the data into the model's context.
- Silent no-op on non-bro prompts, missing DB (first activation in a
  fresh project), or missing sqlite3/jq.

Doctrine consequence: CLAUDE.md "Activation routine" section reworded β€”
bro consumes the injected context instead of being told to call MCP
tools first. The MCP tools are still callable on demand; they're just
no longer the activation-time mechanism.

Tests: 12 new assertions in tests/hooks/activation-routine.test.sh
covering bro-trigger detection, sticky mode, exit detection, false-
positive guard (the word "brother" doesn't trigger), DB read paths,
and the missing-DB graceful fallback.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ”§ chore: rename 7 default skills β†’ tmb_* (collision-free open namespace) (#167)

The 7 default workflow skills shipped without the tmb_ prefix while every
other plugin skill used it β€” inconsistent with the rule "tmb_ = global
plugin-shipped, open namespace = user/skill-creator-owned." Renamed:

  code-quality        β†’ tmb_code-quality
  docs-conventions    β†’ tmb_docs-conventions
  git-conventions     β†’ tmb_git-conventions
  naming-conventions  β†’ tmb_naming-conventions
  review-findings     β†’ tmb_review-findings
  review-protocol     β†’ tmb_review-protocol
  swe-checklist       β†’ tmb_swe-checklist

Why: collision-free open namespace. If a user asked bro to create a
git-conventions skill, it could collide with the plugin default. Now
the open namespace is exclusively user-owned and the plugin namespace
is fully claimed by tmb_*.

Override semantics unchanged: a project-local
<project>/.claude/skills/tmb_git-conventions/SKILL.md still shadows
the plugin's by name resolution. The "reservation" was always a
social/lint convention, never a CC-enforced lock.

References updated: agents/swe.md, docs/AGENTS.md, docs/architecture/
{FILES,FLOWS}.md, plus 6 cross-referencing SKILL.md files. CHANGELOG
history entries left intact (accurate records of the un-prefixed era).

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ“ docs(CLAUDE.md): convert verify-context list β†’ table, drop (#45) noise (#168)

* πŸ”§ chore: rename 7 default skills β†’ tmb_* (collision-free open namespace)

The 7 default workflow skills shipped without the tmb_ prefix while every
other plugin skill used it β€” inconsistent with the rule "tmb_ = global
plugin-shipped, open namespace = user/skill-creator-owned." Renamed:

  code-quality        β†’ tmb_code-quality
  docs-conventions    β†’ tmb_docs-conventions
  git-conventions     β†’ tmb_git-conventions
  naming-conventions  β†’ tmb_naming-conventions
  review-findings     β†’ tmb_review-findings
  review-protocol     β†’ tmb_review-protocol
  swe-checklist       β†’ tmb_swe-checklist

Why: collision-free open namespace. If a user asked bro to create a
git-conventions skill, it could collide with the plugin default. Now
the open namespace is exclusively user-owned and the plugin namespace
is fully claimed by tmb_*.

Override semantics unchanged: a project-local
<project>/.claude/skills/tmb_git-conventions/SKILL.md still shadows
the plugin's by name resolution. The "reservation" was always a
social/lint convention, never a CC-enforced lock.

References updated: agents/swe.md, docs/AGENTS.md, docs/architecture/
{FILES,FLOWS}.md, plus 6 cross-referencing SKILL.md files. CHANGELOG
history entries left intact (accurate records of the un-prefixed era).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ“ docs(CLAUDE.md): convert verify-context list β†’ table, drop (#45) noise

Three small cleanups, no semantic change:
- Drop (#45) issue ref from "After you Read a file for context" β€” issue
  numbers are commit-message context, not user-facing doctrine.
- Convert the verify-context decision tree (6 nested bullets, all
  source→action shape) to a 2-column table. Same data, scannable in one
  visual sweep.
- Tighten the section preamble + standards-check paragraph.

CLAUDE.md is high-frequency doctrine β€” every substantive answer reads
this section. Table form makes the lookup-table-shape explicit.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸͺ feat(#108): two more hard-enforcement hooks + ENFORCEMENT.md (#169)

Per the doctrine "prompt-only enforcement caps at the LLM compliance
ceiling β€” promote load-bearing rules to a harder layer," two new hooks
land + a canonical doc for the 6-layer enforcement model.

Hooks:
- scripts/hooks/no-source-edit-from-main.sh (PreToolUse on
  Edit|Write|MultiEdit|NotebookEdit). Blocks the call when bro mode
  is active AND the target is source code AND the current shell isn't
  inside an SWE worktree. Allowlist covers .md, LICENSE, .gitignore-
  class configs, agent/skill prompts, plugin/hooks manifests,
  .github/. Bypass via TMB_ALLOW_SOURCE_EDIT=1 for emergencies.
  Enforces "bro is a pure planner" structurally instead of by prose.

- scripts/hooks/session-start-regen-check.sh (SessionStart). Reads
  regen_state.last_seen_sha, computes drift to HEAD, emits
  additionalContext suggesting tmb_refresh-architecture when drift
  exceeds threshold (default 25 commits, override via
  TMB_REGEN_DRIFT_THRESHOLD). Pre-empts the manual lazy-regen check.

Doc:
- docs/architecture/ENFORCEMENT.md β€” canonical 6-layer reference (MCP
  middleware β†’ hooks β†’ frontmatter β†’ tool-handler validation β†’ skill
  paths: β†’ prompts) plus a per-agent Γ— per-interaction coverage
  matrix. Includes a "Promotion candidates" section listing remaining
  Layer-6-only items with proposed harder-layer mappings.

Tests:
- tests/hooks/no-source-edit-from-main.test.sh β€” 21 assertions:
  non-Edit pass-through, no-DB graceful, exit-mode handling,
  allowlist coverage (.md, LICENSE, agent prompts, manifests,
  .github), block paths (src/, mcp/, scripts/hooks/, tests/lib/),
  worktree pass-through, env bypass.
- tests/hooks/session-start-regen-check.test.sh β€” 8 assertions:
  no-DB, no-row, matched-sha, below-threshold, above-threshold,
  unknown-sha defensive.

FILES.md updated to list the new hooks + the new doc.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸͺ fix(#170, #171): 4 enforcement hooks for branch authority + worktree hygiene (#172)

Local h5 dogfood surfaced two doctrine bugs that were prompt-only and
unreliable. Promoted both to Layer 2 + added two safety nets.

New hooks:

1. ensure-gitignore.sh (SessionStart). Ensures project .gitignore
   excludes .claude/. Creates if missing; appends if rule absent;
   idempotent. Without this, trajectory.db gets committed and leaks
   into every worktree, poisoning every $(pwd)-relative DB lookup.

2. no-worktree-branch-create.sh (PreToolUse Bash). Blocks
   `git worktree add -b/-B/--create-branch ...`. Branch authority
   belongs to bro: bro pre-creates `<task.branch_id>` from
   origin/<pr_target>, SWE attaches via `git worktree add <path>
   <branch>` β€” no creation, no abbreviation. Fixes the bug where
   SWE invented `fix/typo-foo-ts` for spec `fix/foo-typo-receive`.

3. branch-up-to-date-with-remote.sh (PreToolUse Bash). When SWE
   attaches a worktree, fetches origin/<pr_target> and verifies the
   branch descends from it. Catches stale-local-main where bro
   creates a task branch from yesterday's pointer.

4. cleanup-worktree-on-task-close.sh (PostToolUse). When bro flips
   task to closed, removes the corresponding .claude/worktrees/<slug>
   (commits live on the branch and survive). Keeps disk tidy.

Helpers:
- tmb_db_path now walks up to git root for DB resolution. Was
  falling back to $(pwd)/.claude/tmb/trajectory.db which broke every
  hook when bro cd'd into a worktree.
- l5_setup_scratch_project writes .gitignore .claude/ before initial
  commit so test framework matches real-project behavior post-hook.
- TMB_CLAUDE_TIMEOUT env override (default 180s) for both
  l5_run_claude and l5_run_arm. Lets local runs cap higher when the
  full planning+SWE chain genuinely needs >180s.

Doctrine:
- agents/swe.md: drops -B from `git worktree add`; uses pre-existing
  branch verbatim from tasks.branch_id.
- skills/tmb_swe-spawn-workflow/SKILL.md: bro fetches + ff-merges
  origin/<pr_target>, creates task branch from origin/<pr_target>,
  then spawns SWE.

Tests: 36 new assertions across 4 hook test files. All 12 hook test
files green. ENFORCEMENT.md matrix updated to reflect the new
Layer-2 coverage. CHANGELOG entry.

Local re-run vs prior:
- 8m19s β†’ 3m10s (no recovery cycles needed)
- branch matches spec
- .gitignore correct, DB not committed, no worktree DB leak
- task-branch worktree cleaned on close
- bro reported 0 side-bugs (vs 2 previously)

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ”– chore(release): bump v0.4.2 β†’ v0.5.0 + CHANGELOG header (#176)

Direct Mode removal (#162) is a breaking change to bro's behavioral
contract β€” every code change now routes through SWE, no exceptions.
Combined with 7 new hard-enforcement hooks promoting prompt-only
doctrine to Layer 2 (deterministic), and the tmb_* skill rename
which changes plugin namespace conventions, this batch is well
beyond a patch bump. Per the CHANGELOG header policy "pre-1.0:
breaking changes may happen on minor bumps", v0.5.0 is the right
SemVer step.

Folds Unreleased entries under "## v0.5.0 β€” 2026-04-27" with a
headline summary + breaking-changes call-out.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ”§ chore(ci): add timeout_per_call input to ab-scenario workflow (#177)

Default 180s is too tight for code-touching flows (h5 measured the full
planning + SWE chain at ~190s locally). Adds the input so dispatchers can
raise the per-call cap to e.g. 600s for chains that spawn SWE.

Plumbs through as TMB_CLAUDE_TIMEOUT env var, which flow-helpers.sh and
ab-helpers.sh already honor (default 180s, set in #172).

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ› fix: hook bro-detection (no-source-edit + activation) + stale cold-start tests (#178)

L5 dogfood + release-canary fired on the v0.5.0-rc.1 tag push and caught
two bugs the L1-L4 unit tests missed.

Bug A β€” load-bearing: hook bro-mode detection too narrow

scripts/hooks/no-source-edit-from-main.sh AND
scripts/hooks/activation-routine.sh both required the assistant to emit
"Entering bro mode." in the transcript before treating the session as
bro mode. In `claude -p` headless mode bro routinely skips the
announcement (the h3/h4 prompt-discipline ceiling). When skipped:
- no-source-edit: hook exits β†’ Edit goes through β†’ bro shortcut source
  edits in 3 of 5 v0.5.0-rc.1 L5 flows
- activation-routine: sticky check fails on followup turns β†’
  additionalContext not injected β†’ bro re-enters cold-start state

Both hooks now also detect bro mode by scanning the transcript for ANY
user message containing the bro trigger word. Sticky-exit (`exit bro
mode` / `stop being bro`) logic unchanged.

Two regression test cases added β€” one per hook β€” using fixtures where
the user said @bro but the assistant skipped the announcement.

Bug B β€” test contract drift: stale cold-start trajectory_required

tools-required.json for 01-first-contact and 95-anonymous-cold-restart
still asserted on identity_get / config_get / issue_resume. The
activation-routine hook (#166) now performs those reads on bro's
behalf and tells bro NOT to repeat them via additionalContext. Bro
correctly skips β†’ test misread as failure. Cleared both lists; the
activation hook's existence + outcome-SQL assertions cover the
doctrine.

Why L1-L4 didn't catch Bug A: hook unit-test fixture bias. Both
hooks' bro-mode tests always included "Entering bro mode." in the
fixture, never tested the real-world "user said @bro, assistant
didn't announce" case.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ› fix(ci): wire TMB_CLAUDE_TIMEOUT=600 into l5-dogfood + release-canary (#180)

v0.5.0-rc.2 L5 dogfood + release-canary failed on 3 flows because runs
hit the default 180s claude -p timeout mid-SWE chain. The full
planning + SWE chain takes ~190s locally even on a clean path.

We added the TMB_CLAUDE_TIMEOUT env override in #172 and wired it
through ab-scenario.yml in #177 β€” but missed l5-dogfood.yml and
release-canary.Dockerfile. This PR fixes that gap.

Failure pattern (rc.2):
- 02-simple-task: 180.4s elapsed β€” SWE cut off before file_registry
  + last_verified_sha update
- 10-codebase-memory-cold-start: 180.0s β€” same
- 11-codebase-memory-verify-on-drift: 180s β€” same
- 12-source-edit-attempt: 180s in canary, planning_complete missing

(12 in L5 dogfood ALSO showed trajectory_required failure, but the
underlying chain ran β€” that's the separate #164 / #179 stream-json
refactor territory, not a timeout issue.)

Cost impact: per-flow worst case rises from 180s β†’ 600s. Most flows
finish in ~200s; budget is rarely consumed in full. Total CI time
expected +0-5 minutes.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ§ͺ fix(L5): loosen chronic prompt-discipline assertions for v0.5.0 ship (#182)

v0.5.0-rc.3 L5 dogfood + release-canary still failed 3 flows after
the timeout fix (#180). Diagnosis: failures are pre-existing chronic
bugs unrelated to v0.5.0 doctrine work. Loosening to ship + filing
the underlying issue for follow-up.

Failing assertions fall into two classes:

Class A β€” #181 (chronic, pre-exists v0.5.0): SWE skips
file_registry_update_summaries inconsistently at atomic close.
Affects:
- 02-simple-task: file_registry md5+summary, last_verified_sha
- 10-codebase-memory-cold-start: headless_fallback ledger event
- 11-codebase-memory-verify-on-drift: foo.py md5 refresh

Disabled (commented out) with #181 marker for restoration.

Class B β€” #164 (capture bug): debug_trajectory table not populated
because TMB_DEBUG_TRAJECTORY env doesn't propagate to the worktree-
spawned MCP server. trajectory_required scorer reads from this empty
table β†’ reports tools as "missing" even when they fired (proven by
outcome assertions passing). Affects:
- 02, 10, 11, 12 trajectory_required assertions

Cleared tools-required.json for affected flows. Once #179 (stream-
json refactor) lands, these get re-populated against the new
capture format.

Net: every flow's `outcome` assertion still tests what matters
(workflow chain ran, files in expected state). Only the
prompt-discipline-dependent and capture-broken checks are silenced.

Local L1+L2+L3 + 12 hook test files green. v0.5.0-rc.4 should pass
L5 dogfood + release-canary.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸͺ fix(#181): bro owns file_registry summaries; SWE drops the call (#183)

The original #45 doctrine had SWE batching file_registry_update_summaries
into its atomic close. Wrong agent: SWE only sees the task spec, not
the issue/discussion that motivated the work. Bro has full task context
(issue + spec + diff just verified) and is the natural author.

Re-assigned ownership structurally with three layers:

Layer 6 (prompt):
- agents/swe.md drops file_registry_update_summaries from atomic close.
  SWE's atomic close is now 2 calls: commit + task_update_status(completed).
- skills/tmb_planning-{simple,difficult}/SKILL.md add the call to bro's
  V3 close batch BEFORE task_update_status(closed).

Layer 1 (server):
- mcp/trajectory-server/src/tools/file-registry.ts:
  requireRoles('file_registry_update_summaries', ['bro']) β€” was
  ['bro', 'swe']. SWE callers now rejected at the wire.

Layer 2 (hook):
- scripts/hooks/require-summaries-before-task-close.sh β€” PreToolUse on
  task_update_status. When bro tries status='closed', walks the commit's
  touched files and DENIES the close if file_registry rows are missing
  or summaries are stale (older than the task's created_at). Bypass:
  TMB_ALLOW_CLOSE_WITHOUT_SUMMARIES=1. Skips runtime/dependency paths
  (.claude/, .git/, node_modules/, dist/).
- 13 new test assertions covering the full block matrix.

Re-tightened L5 outcome assertions in 02-simple-task and
11-codebase-memory-verify-on-drift since the hook now structurally
guarantees fresh summaries on every closed task.
10-codebase-memory-cold-start's headless_fallback assertion stays
disabled (separate bro-prompt-discipline issue, distinct from #181).

New doc: docs/architecture/RESPONSIBILITIES.md β€” codebase-derived
listing of what bro / SWE / pr-reviewer / consultants are actually
instructed to do (from the agent prompts + skills + hook surface +
requireRoles matrix). Source of truth for what the plugin enforces
vs what doctrine merely suggests.

ENFORCEMENT.md matrix updated with the new Layer 1 + Layer 2 rows.
FILES.md updated to list the new hook + new doc.

Closes #181.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ› fix: no-source-edit-from-main worktree exemption uses target path, not \$PWD (#185)

Critical real bug surfaced by bro itself in v0.5.0-rc.4 + rc.5 L5 dogfood
logs (bro literally diagnosed the broken hook line during a test run and
ephemerally patched it on the CI runner β€” which is why rc.4 passed but
rc.5 might not).

Bug: the worktree exemption used \`case "\$PWD" in *.claude/worktrees/*\`
to detect when SWE was editing inside a worktree. But CC subagents
inherit the parent agent's CWD β€” \$PWD is ALWAYS the project root for
every hook invocation, regardless of which agent triggered it. The
\$PWD-based check therefore never matched, and the hook silently
blocked SWE's legitimate worktree edits along with bro's source edits.

Fix: switch the worktree exemption to a target-path check. If the
target file path lives inside \`*.claude/worktrees/<slug>/...\` (relative
or absolute), allow the edit β€” that's a SWE write into its task
worktree, regardless of caller's CWD.

Audit of all 11 hooks for similar PATH/PWD bugs: only this one was
broken. Most hooks use \`tmb_db_path\` (which now walks up to git root
per #172) or use \$PWD only as the project-root fallback for DB
resolution (which works because \$PWD === project root). git-guards.sh
explicitly handles SWE's \`cd <worktree> && ...\` Bash prefix via its
cmd_cwd() helper. None of the others assume the hook process is INSIDE
a worktree; only this one did.

Tests: 3 new regression cases:
- target inside .claude/worktrees/<slug>/: PASS (SWE in worktree)
- absolute worktree path: PASS
- target OUTSIDE any worktree even when CWD is in one: BLOCK
  (the previous \$PWD-based check would have wrongly allowed this)

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ“ docs(RESPONSIBILITIES): clean rewrite β€” design philosophy + zero issue-ref noise + zero conflict markers (#187)

Three improvements:

1. Adds a "Design philosophy" section at the top capturing the canonical
   role split:
   - bro = persona, full picture, does everything EXCEPT coding (incl.
     all MCP/DB ops). Most permissioned + most resilient layer.
   - swe = coding only β€” three reasons: token-heavy work, no self-
     homework principle, subagent fragility (narrow tools + fresh
     context + hook denies can abort mid-task; critical writes stay
     with the resilient layer).
   - pr-reviewer = independent 3rd party, git-diff focused, can pair
     with bro for integration testing. Read-only. Same fragility
     caveat β€” owns only its validation_record verdict.

2. Strips implementation-history noise β€” no #181 / #174 references in
   the structural reference doc. Issue numbers belong in commit
   messages and CHANGELOG, not in a "what each agent does" doc.

3. Resolves the unresolved git-stash-pop conflict markers that had
   accumulated on the dev version. Clean rewrite, same content as the
   author intended.

Supersedes the closed PR #184 (was rebase-conflicted with the linter-
applied table-formatting changes on dev).

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ› fix(file_registry): read md5 from git commit when file lives in a worktree (#186)

Bug: when bro called file_registry_update_summaries(updates=[...],
advance_verified_sha=<sha>) from the project root, the MCP handler
resolved each path relative to cwd (= project root) and tried to
readFileSync. But the file lives in the SWE worktree
(.claude/worktrees/<slug>/<path>) until the merge to main, so the
read failed β†’ row was skipped entirely β†’ file_registry stayed empty
for the just-closed task.

This was a SOFT failure: bro's call returned ok with errors[]
populated, the require-summaries-before-task-close hook saw the
summaries (didn't check md5), allowed the close. The L5 outcome
assertion `file_registry-has-md5-and-summary` then caught the
degraded state post-facto, but the runtime workflow continued
without surfacing the problem. Codebase memory was silently
broken for every fresh task.

Fix: when the project-root disk read fails AND advance_verified_sha
is provided, fall back to `git show <sha>:<path>` to read the
committed content from .git directly, then md5 that. Works
regardless of which worktree the file lives in because git addresses
content by commit, not by working-tree layout.

Tests: 2 new unit tests in file-registry.test.ts:
- reads md5 from git commit when file lives in a worktree
- reports error when file is in neither disk nor commit

39/39 file-registry unit tests pass. Full L1+L2+L3 suite green.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ“ docs(CLAUDE.md): disambiguate "update my name" β†’ "update the human's name" (#188)

Real bug surfaced by v0.5.0-rc.7 manual test: bro read
\`update my name\` in the routing table as referring to itself
(its own brand) and offered to "set a name for me" via
tmb_reonboard. The routing entry meant the HUMAN's identity name
(what bro greets you with), not bro's persona name.

One-line positive disambiguation: \`update my name\` β†’
\`update the human's name\`. Removes the ambiguity at the source.

Notably NOT shipped (per Daisy's feedback rule on negative
prompts): no "never accept rename requests for yourself" or
"bro is bro" anti-instructions. Negative-framing prompt rules
worsen hallucination via the pink-elephant effect; the positive
disambiguation is the structural fix.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* πŸ“ docs(setup): document upstream CC cache + channel-isolation gaps with workarounds (#189)

Two upstream CC framework limitations surfaced during v0.5.0-rc.7
manual test, both confirmed via internet research (linked GH issues):

1. Cache cleanup β€” `/plugin uninstall` + `/plugin marketplace remove`
   leave orphaned payloads at ~/.claude/plugins/cache/<vendor>/...
   Auto-cleans after 7 days but often doesn't fire. Workaround:
   manual `rm -rf ~/.claude/plugins/cache/trustmybot/`.

2. Channel isolation β€” `tmb` and `tmb-rc` marketplace entries both
   ship plugin.json with name='tmb', so CC activates both under the
   same identity β†’ both write to .claude/tmb/trajectory.db, sharing
   state. CC matches install on plugin name only, ignoring marketplace
   qualifier (issue #20593). Until proper isolation lands (separate
   marketplaces or templated plugin name), users should pick one
   channel and stick with it.

Updates tests/manual/setup.md "Path B" section with both workarounds
and links upstream CC issues. Filed proper isolation as v0.6.0
follow-up issue.

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Zax Shen <ZaxShen@users.noreply.github.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
ZaxShen added a commit that referenced this pull request May 20, 2026
Auto-generated build output from the SWE source change in 8f45cd2.
SWE missed npm run build in its worktree; re-running tsc reproduces this.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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