Hi, Thanks for your code，I‘m doing research about this recently，but I got no result after running this code，and I have checked my input file，there seems to be normal. Then I checked your code carefully, I'm afraid I met a problem in your code in line 68
"$protein = substr( $chrom, $gene{$mrna}{"start"}, $gene{$mrna}{"stop"} - $gene{$mrna}{"start"} + 1 ) ; " my $chrom was blank, so the “substr“ function has no subject to slice. I have no idea why this situation happend?
Hi, Thanks for your code，I‘m doing research about this recently，but I got no result after running this code，and I have checked my input file，there seems to be normal. Then I checked your code carefully, I'm afraid I met a problem in your code in line 68
"$protein = substr( $chrom, $gene{$mrna}{"start"}, $gene{$mrna}{"stop"} - $gene{$mrna}{"start"} + 1 ) ; " my $chrom was blank, so the “substr“ function has no subject to slice. I have no idea why this situation happend?