Prerequisites

• R (>= 4.2 recommended), Rstudio
• 8GB of memory,(recommended memory >=16GB)
• Load objects provided by UBC (.rds)

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Overview

TODO: The goal is not just to run code, but to explain why each step exists and what decisions users should think about during analysis.

└── xenium_demo/
    ├── Readme.md  # Current file  
    ├── scripts/ 
    │   ├── Walkthrough.md
    │   ├── single_file_demo.R
    │   ├── Merging_raw.R
    │   ├── merging_harmony.R

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Open in Rstudio

To download and open the repo in Rstudio, do the following:

First download the repository:

• Click on the green button with "code"
• Then Click on Download Zip
• In your downloads folder, unzip the file to your desired directory

Then Open Rstudio and:

• Click on file (top-left)
• Click on new project, then existing directory
• Navigate to and select unzipped directory