Flatpak app installation and update hangs

[Easel4932]

Hi, I am running Aurora Linux on my Lenovo Thinkpad P14s Gen 5 AMD. The issue I am encountering is the following :
after some time that the system is booted probably around 1 hour, any flatpak app installation or update via cli or Bazaar hangs. Using the cli, I have the following logs (update apps here) :

Proceed with these changes to the system installation? [Y/n]: 
Updating 1/18…
F: Calling system helper: GetRevokefsFd
F: Calling system helper: GetRevokefsFd
F: using fuse: 1
F: using fuse: 1
F: using fuse: 0
F: flatpak_dir_pull: Using commit 9f17fbc8dcee2534c04a70bef0deeae97ec6bbd13ba5ee36651cbadce4c63177 for pull of ref app/fm.reaper.Reaper/x86_64/stable from remote flathub
F: Preparing transaction in repository 0x55bed232c750
F: Using new tmpdir staging-4d70f3fe-153f-4480-9ddc-d79e3748a75c-HWZMJ7
F: starting fetch of delta index delta-indexes/nx/f7yNzuJTTASnC+8N7q6X7Gu9E7pe42ZRy63OTGMXc.index
Updating 1/18…                        0%  0 bytes/s
F: _ostree_fetcher_should_retry_request: error: unset, n_retries_remaining: 5
F: starting fetch of 9f17fbc8dcee2534c04a70bef0deeae97ec6bbd13ba5ee36651cbadce4c63177.commit (detached)
F: fetch of 9f17fbc8dcee2534c04a70bef0deeae97ec6bbd13ba5ee36651cbadce4c63177.commit (detached) complete
F: _ostree_fetcher_should_retry_request: error: unset, n_retries_remaining: 5
F: Adding GPG keyring data from flathub.trustedkeys.gpg to verifier
F: GnuPG >= 2.1.17, skipping gpg-agent cleanup in /tmp/ostree-gpg-WT7OxW
F: pull: idle, exiting mainloop
Updating 1/18… █                      5%
F: Loading https://www.reaper.fm/files/7.x/reaper777_linux_x86_64.tar.xz using curl
Updating 1/18… ███████████████▊      79%  10,5 MB/s
Updating 1/18… ████████████████████ 100%  13,6 MB/s
F: Received 13599360 bytes
F: Committing transaction in repository 0x55bed232c750
F: txn commit staging-4d70f3fe-153f-4480-9ddc-d79e3748a75c-HWZMJ7
F: Calling system helper: Deploy

And the command hangs here and does not seem to do anything else. I tried let it be for around 15 minutes, to no avail.
I tried to run systemctl restart flatpak-system-helper.service : does not work and logs only shows something like flatpak-system-helper[36945]: system: Pulled app/fm.reaper.Reaper/x86_64/stable from /var/lib/flatpak/repo/tmp/flatpak-cache-8KUGS3/repo-4JlfPI

but no errors or timeout. I do have the /usr/bin/fusermount and /usr/bin/fusermount3 binsaries. Rebooting my machine fixes the issue but only for some time, then it reappears.
Has anyone encountered this issue ? What could I try/do to help debug this ?

Thanks for any help.

[renner0e]

Strange, could you upload a log of your entire session?

sudo journalctl --no-hostname -b 0 > flatpak-error.txt

and attach it to your post

[Easel4932]

The log is quite long and contains many private information so I would prefer not sharing in its entirety unfortunately. However, I used grep to get all instance of flatpak logs. Here is the filtered log.
flatpak-only-error.txt

[renner0e]

I searched through it and the log is mostly useless due to only including logs from the flatpak binary, which also includes your installed applications, which makes it very very noisy, did you also not shutdown your PC? These are logs spanning 7 days.

I'm not sure how to help you here, if you say that it happens after roughly one hour then you might want to look in the journal right after it happens? What if you just leave the PC and you don't do anything to it? Does it still happen?

[Easel4932]

I'll reboot my PC and get logs right after I encounter the issue. I will upload the logs here. Sorry for the mess.

[Easel4932]

Hello again, I just rebooted my PC and faced the issue again after about 20 minutes of uptime (tried to install a software from Bazaar, but it never ends), here is the log :
flatpak-error.txt