Bonsai-Workflows

This repository contains Bonsai workflows organized into three main categories:

Repository Structure

📋 Protocols

Workflows specific to individual behavioural protocols, or general protocol structures used in the lab. Examples include AFC tasks, passive stimulus presentations, etc.

🔧 Calibrations

Standalone calibration workflows such as gamma-calibration, laser-power-calibration, etc.

⚙️ Utilities

Workflow "modules" that interface with hardware components. Examples include camera acquisition, reward delivery, etc.

General Guidelines

When adding new workflows to any category:

1. Create a folder with a descriptive name
2. Add a README.md file in the folder that includes:
   • Screenshot of the workflow
   • Clear description and purpose
   • Hardware requirements (if applicable)
   • Usage instructions
   • Output file specifications
3. Include the workflow file(s) (.bonsai files)
4. Add any configuration files needed
5. Test the workflow with actual hardware before committing