PromoterStrength

Model to predict promoter strength using embeddings generated from a DNA large language model.

Name		Name	Last commit message	Last commit date
Latest commit History 60 Commits
.ipynb_checkpoints		.ipynb_checkpoints
Final Code		Final Code
.DS_Store		.DS_Store
1-s2.0-S088875431830613X-mmc1.txt		1-s2.0-S088875431830613X-mmc1.txt
README.md		README.md
Word2Vec.ipynb		Word2Vec.ipynb
all_embeddings_100m_max.npy		all_embeddings_100m_max.npy
all_embeddings_100m_mean.npy		all_embeddings_100m_mean.npy
data.csv		data.csv
data_filter.ipynb		data_filter.ipynb
embeddings.ipynb		embeddings.ipynb
filtered_data.csv		filtered_data.csv
promoter_processed.csv		promoter_processed.csv
split_data.ipynb		split_data.ipynb
test_data_clf_max.csv		test_data_clf_max.csv
test_data_clf_mean.csv		test_data_clf_mean.csv
train.ipynb		train.ipynb
train_classifier.ipynb		train_classifier.ipynb
train_data_clf_mean.csv		train_data_clf_mean.csv
training.ipynb		training.ipynb
word2vec_promoter.model		word2vec_promoter.model

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