Bug: seed_sampling parameter missing in alphafold3 submodule
Hi, thank you for this great tool!
When running AFsample3 with the current repository, I get the following error:
TypeError: Input.with_multiple_seeds() got an unexpected keyword argument 'seed_sampling'
This happens at run_afsample3.py line 902:
fold_input = fold_input.with_multiple_seeds(_NUM_SEEDS.value, seed_sampling=_SEED_SAMPLING.value)
However, the with_multiple_seeds method in the alphafold3 submodule (commit a8ecdb2) only accepts num_seeds:
def with_multiple_seeds(self, num_seeds: int) -> Self:
It seems like the submodule may not be pointing to the correct commit that includes the seed_sampling implementation.
Environment:
- alphafold3 submodule commit: a8ecdb2 (v3.0.1-80-ga8ecdb2)
- Python 3.11
- Cloned with
git submodule update --init --recursive
Could you update the submodule reference or provide guidance on the intended implementation of seed_sampling?
Thank you!
Bug:
seed_samplingparameter missing in alphafold3 submoduleHi, thank you for this great tool!
When running AFsample3 with the current repository, I get the following error:
This happens at
run_afsample3.pyline 902:However, the
with_multiple_seedsmethod in the alphafold3 submodule (commita8ecdb2) only acceptsnum_seeds:It seems like the submodule may not be pointing to the correct commit that includes the
seed_samplingimplementation.Environment:
git submodule update --init --recursiveCould you update the submodule reference or provide guidance on the intended implementation of
seed_sampling?Thank you!