Development#518
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adit-anand merged 90 commits intoreleasefrom May 6, 2026
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RM Update README.md
- Heatmap itself is still not responsive (a work in progress) - Heatmap no longer extends rightward beyond width of tabs - Updated some aesthetics of heatmap section (font sizes, labels' text) - Updated comments to be more instructive
- Shortened and centered title - Added expression value to y-axis - Updated font sizes
Update development branch
- Heatmap itself is still not responsive (a work in progress) - Heatmap no longer extends rightward beyond width of tabs - Updated some aesthetics of heatmap section (font sizes, labels' text) - Updated comments to be more instructive
- Shortened and centered title - Added expression value to y-axis - Updated font sizes
- Because, previously, these were getting cut off in the visualization
…ta explore section - Previously, many of these clinical features were represented as pie charts, which made the values difficult to read
- It does not contain any patient barcodes/expression data
- Removed 'date' and 'tool' because they yield the same value across all tumor types - Removed 'tcga_participant_barcode' because it does not align with the purpose of the data explore section at the moment
…ck/partition lists for heatmap and violin plots - For same reason as why they were removed from clinical feature select dropdown
- Remove default faceting by tumor type (to let the user decide how they'd like to facet their cohort) - In facet by checklist, rename "cohort" to "tumor type" - Add comments to code
* - Added responsiveness to heatmap legend - Heatmap itself is still not responsive (a work in progress) - Heatmap no longer extends rightward beyond width of tabs - Updated some aesthetics of heatmap section (font sizes, labels' text) - Updated comments to be more instructive * Update violin plots' formatting - Shortened and centered title - Added expression value to y-axis - Updated font sizes * Add text to display number of samples in final cohort * - Added responsiveness to heatmap legend - Heatmap itself is still not responsive (a work in progress) - Heatmap no longer extends rightward beyond width of tabs - Updated some aesthetics of heatmap section (font sizes, labels' text) - Updated comments to be more instructive * Update violin plots' formatting - Shortened and centered title - Added expression value to y-axis - Updated font sizes * Add text to display number of samples in final cohort * Update min and max values displayed in violin plots - Because, previously, these were getting cut off in the visualization * Decrease top margin of violin plots section * Represent clinical features with numerical values as histograms in data explore section - Previously, many of these clinical features were represented as pie charts, which made the values difficult to read * Remove 'FPPP' from tumor types dropdown - It does not contain any patient barcodes/expression data * DIsable certain options from clinical feature dropdown - Removed 'date' and 'tool' because they yield the same value across all tumor types - Removed 'tcga_participant_barcode' because it does not align with the purpose of the data explore section at the moment * Remove 'date', 'tcga_participant_barcode', and 'tool' from sample track/partition lists for heatmap and violin plots - For same reason as why they were removed from clinical feature select dropdown * Increase font size of heatmap sample track labels * Revise based on Kevin's review
Expression distribution chart fix + Survival plot text wrap
…e censoring events
…ectors are selected
Survival Plot Formatting and Rendering
Graceful Failure for Firebrowse Errors
…atures filtered out
…stograms/pie charts
…tion select options for violin plots
Pie chart selection, variable filters and violin plot fix
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Merge development into release branch