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cleanup() no longer deletes user-created files in .millstone/. Only removes known transient files (STOP.md). Previously it removed everything except a hardcoded allowlist, silently destroying policy.toml, project.toml, and any user files. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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Summary
cleanup()no longer deletes user-created files in.millstone/STOP.md)policy.toml,project.toml, and any user filesTest plan
tests/unit/test_cleanup.py)🤖 Generated with Claude Code