infra: improve ai infrastructure#191
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{qcthat} Report: User AcceptanceNo issues are awaiting UAT. This report was generated by this GitHub Actions run. Last updated: 2026-03-24 13:33:31 UTC Session Info─ Session info ───────────────────────────────────────────────────────────────setting value version R version 4.5.3 (2026-03-11) os Ubuntu 24.04.3 LTS system x86_64, linux-gnu ui X11 language (EN) collate C.UTF-8 ctype C.UTF-8 tz UTC date 2026-03-24 pandoc 3.1.11 @ /opt/hostedtoolcache/pandoc/3.1.11/x64/pandoc quarto NA ─ Packages ─────────────────────────────────────────────────────────────────── package * version date (UTC) lib source askpass 1.2.1 2024-10-04 [1] RSPM astgrepr 0.1.1 2025-06-07 [1] RSPM backports 1.5.0 2024-05-23 [1] RSPM base * 4.5.3 2026-03-11 [3] local base64enc 0.1-6 2026-02-02 [1] RSPM boot 1.3-32 2025-08-29 [3] CRAN (R 4.5.3) brio 1.1.5 2024-04-24 [1] RSPM bslib 0.10.0 2026-01-26 [1] RSPM cachem 1.1.0 2024-05-16 [1] RSPM callr 3.7.6 2024-03-25 [1] RSPM checkmate 2.3.4 2026-02-03 [1] RSPM class 7.3-23 2025-01-01 [3] CRAN (R 4.5.3) cli 3.6.5 2025-04-23 [1] RSPM clipr 0.8.0 2022-02-22 [1] RSPM cluster 2.1.8.2 2026-02-05 [3] CRAN (R 4.5.3) codetools 0.2-20 2024-03-31 [3] CRAN (R 4.5.3) compiler 4.5.3 2026-03-11 [3] local covr 3.6.5 2025-11-09 [1] RSPM crayon 1.5.3 2024-06-20 [1] RSPM credentials 2.0.3 2025-09-12 [1] RSPM curl 7.0.0 2025-08-19 [1] RSPM datasets * 4.5.3 2026-03-11 [3] local desc 1.4.3 2023-12-10 [1] RSPM diffobj 0.3.6 2025-04-21 [1] RSPM digest 0.6.39 2025-11-19 [1] RSPM downlit 0.4.5 2025-11-14 [1] RSPM dplyr 1.2.0 2026-02-03 [1] RSPM emoji 16.0.0 2024-10-28 [1] RSPM evaluate 1.0.5 2025-08-27 [1] RSPM fansi 1.0.7 2025-11-19 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM fontawesome 0.5.3 2024-11-16 [1] RSPM foreign 0.8-91 2026-01-29 [3] CRAN (R 4.5.3) fs 2.0.0 2026-03-22 [1] RSPM generics 0.1.4 2025-05-09 [1] RSPM gert 2.3.1 2026-01-11 [1] RSPM gh 1.5.0 2025-05-26 [1] RSPM git2r 0.36.2 2025-03-29 [1] RSPM gitcreds 0.1.2 2022-09-08 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM graphics * 4.5.3 2026-03-11 [3] local grDevices * 4.5.3 2026-03-11 [3] local grid 4.5.3 2026-03-11 [3] local highr 0.12 2026-03-06 [1] RSPM htmltools 0.5.9 2025-12-04 [1] RSPM httr 1.4.8 2026-02-13 [1] RSPM httr2 1.2.2 2025-12-08 [1] RSPM ini 0.3.1 2018-05-20 [1] RSPM jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 2.0.0 2025-03-27 [1] RSPM KernSmooth 2.23-26 2025-01-01 [3] CRAN (R 4.5.3) knitr 1.51 2025-12-20 [1] RSPM lattice 0.22-9 2026-02-09 [3] CRAN (R 4.5.3) lazyeval 0.2.2 2019-03-15 [1] RSPM lifecycle 1.0.5 2026-01-08 [1] RSPM magrittr 2.0.4 2025-09-12 [1] RSPM MASS 7.3-65 2025-02-28 [3] CRAN (R 4.5.3) Matrix 1.7-4 2025-08-28 [3] CRAN (R 4.5.3) memoise 2.0.1 2021-11-26 [1] RSPM methods * 4.5.3 2026-03-11 [3] local mgcv 1.9-4 2025-11-07 [3] CRAN (R 4.5.3) mime 0.13 2025-03-17 [1] RSPM nlme 3.1-168 2025-03-31 [3] CRAN (R 4.5.3) nnet 7.3-20 2025-01-01 [3] CRAN (R 4.5.3) openssl 2.3.5 2026-02-26 [1] RSPM pak 0.9.2 2026-01-07 [2] local parallel 4.5.3 2026-03-11 [3] local pillar 1.11.1 2025-09-17 [1] RSPM pkgbuild 1.4.8 2025-05-26 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM pkgdown 2.2.0 2025-11-06 [1] any (@2.2.0) pkgload 1.5.0 2026-02-03 [1] RSPM praise 1.0.0 2015-08-11 [1] RSPM processx 3.8.6 2025-02-21 [1] RSPM ps 1.9.1 2025-04-12 [1] RSPM purrr 1.2.1 2026-01-09 [1] RSPM qcthat 1.1.2 2026-03-24 [1] Github (Gilead-BioStats/qcthat@d0958dc) R6 2.6.1 2025-02-15 [1] RSPM ragg 1.5.2 2026-03-23 [1] RSPM rappdirs 0.3.4 2026-01-17 [1] RSPM rex 1.2.1 2021-11-26 [1] RSPM rlang 1.1.7 2026-01-09 [1] RSPM rmarkdown 2.30 2025-09-28 [1] RSPM rpart 4.1.24 2025-01-07 [3] CRAN (R 4.5.3) rprojroot 2.1.1 2025-08-26 [1] RSPM rrapply 1.2.8 2025-11-25 [1] RSPM rstudioapi 0.18.0 2026-01-16 [1] RSPM sass 0.4.10 2025-04-11 [1] RSPM sessioninfo 1.2.3 2025-02-05 [1] any (@1.2.3) spatial 7.3-18 2025-01-01 [3] CRAN (R 4.5.3) splines 4.5.3 2026-03-11 [3] local stats * 4.5.3 2026-03-11 [3] local stats4 4.5.3 2026-03-11 [3] local stbl 0.2.0.9004 2026-03-24 [1] local stringi 1.8.7 2025-03-27 [1] RSPM stringr 1.6.0 2025-11-04 [1] RSPM survival 3.8-6 2026-01-16 [3] CRAN (R 4.5.3) sys 3.4.3 2024-10-04 [1] RSPM systemfonts 1.3.2 2026-03-05 [1] RSPM tcltk 4.5.3 2026-03-11 [3] local testthat 3.3.2 2026-01-11 [1] RSPM textshaping 1.0.5 2026-03-06 [1] RSPM tibble 3.3.1 2026-01-11 [1] RSPM tidyr 1.3.2 2025-12-19 [1] RSPM tidyselect 1.2.1 2024-03-11 [1] RSPM tinytex 0.58 2025-11-19 [1] RSPM tools 4.5.3 2026-03-11 [3] local usethis 3.2.1 2025-09-06 [1] RSPM utf8 1.2.6 2025-06-08 [1] RSPM utils * 4.5.3 2026-03-11 [3] local vctrs 0.7.2 2026-03-21 [1] RSPM waldo 0.6.2 2025-07-11 [1] RSPM whisker 0.4.1 2022-12-05 [1] RSPM withr 3.0.2 2024-10-28 [1] RSPM xfun 0.57 2026-03-20 [1] RSPM xml2 1.5.2 2026-01-17 [1] RSPM yaml 2.3.12 2025-12-10 [1] RSPM zip 2.3.3 2025-05-13 [1] RSPM [1] /home/runner/work/_temp/Library [2] /opt/R/4.5.3/lib/R/site-library [3] /opt/R/4.5.3/lib/R/library
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{qcthat} ReportsPR-Associated Issues█ A qcthat issue test matrix with 0 milestones, 0 issues, and 0 testsCompleted Issues✅ A qcthat issue test matrix with 3 milestones, 68 issues, and 265 tests⭕ 32 issues lack tests This report was generated by this GitHub Actions run. Last updated: 2026-03-24 13:33:33 UTC Session Info─ Session info ───────────────────────────────────────────────────────────────setting value version R version 4.5.3 (2026-03-11) os Ubuntu 24.04.3 LTS system x86_64, linux-gnu ui X11 language (EN) collate C.UTF-8 ctype C.UTF-8 tz UTC date 2026-03-24 pandoc 3.1.11 @ /opt/hostedtoolcache/pandoc/3.1.11/x64/pandoc quarto NA ─ Packages ─────────────────────────────────────────────────────────────────── package * version date (UTC) lib source askpass 1.2.1 2024-10-04 [1] RSPM astgrepr 0.1.1 2025-06-07 [1] RSPM backports 1.5.0 2024-05-23 [1] RSPM base * 4.5.3 2026-03-11 [3] local base64enc 0.1-6 2026-02-02 [1] RSPM boot 1.3-32 2025-08-29 [3] CRAN (R 4.5.3) brio 1.1.5 2024-04-24 [1] RSPM bslib 0.10.0 2026-01-26 [1] RSPM cachem 1.1.0 2024-05-16 [1] RSPM callr 3.7.6 2024-03-25 [1] RSPM checkmate 2.3.4 2026-02-03 [1] RSPM class 7.3-23 2025-01-01 [3] CRAN (R 4.5.3) cli 3.6.5 2025-04-23 [1] RSPM clipr 0.8.0 2022-02-22 [1] RSPM cluster 2.1.8.2 2026-02-05 [3] CRAN (R 4.5.3) codetools 0.2-20 2024-03-31 [3] CRAN (R 4.5.3) compiler 4.5.3 2026-03-11 [3] local covr 3.6.5 2025-11-09 [1] RSPM crayon 1.5.3 2024-06-20 [1] RSPM credentials 2.0.3 2025-09-12 [1] RSPM curl 7.0.0 2025-08-19 [1] RSPM datasets * 4.5.3 2026-03-11 [3] local desc 1.4.3 2023-12-10 [1] RSPM diffobj 0.3.6 2025-04-21 [1] RSPM digest 0.6.39 2025-11-19 [1] RSPM downlit 0.4.5 2025-11-14 [1] RSPM dplyr 1.2.0 2026-02-03 [1] RSPM emoji 16.0.0 2024-10-28 [1] RSPM evaluate 1.0.5 2025-08-27 [1] RSPM fansi 1.0.7 2025-11-19 [1] RSPM fastmap 1.2.0 2024-05-15 [1] RSPM fontawesome 0.5.3 2024-11-16 [1] RSPM foreign 0.8-91 2026-01-29 [3] CRAN (R 4.5.3) fs 2.0.0 2026-03-22 [1] RSPM generics 0.1.4 2025-05-09 [1] RSPM gert 2.3.1 2026-01-11 [1] RSPM gh 1.5.0 2025-05-26 [1] RSPM git2r 0.36.2 2025-03-29 [1] RSPM gitcreds 0.1.2 2022-09-08 [1] RSPM glue 1.8.0 2024-09-30 [1] RSPM graphics * 4.5.3 2026-03-11 [3] local grDevices * 4.5.3 2026-03-11 [3] local grid 4.5.3 2026-03-11 [3] local highr 0.12 2026-03-06 [1] RSPM htmltools 0.5.9 2025-12-04 [1] RSPM httr 1.4.8 2026-02-13 [1] RSPM httr2 1.2.2 2025-12-08 [1] RSPM ini 0.3.1 2018-05-20 [1] RSPM jquerylib 0.1.4 2021-04-26 [1] RSPM jsonlite 2.0.0 2025-03-27 [1] RSPM KernSmooth 2.23-26 2025-01-01 [3] CRAN (R 4.5.3) knitr 1.51 2025-12-20 [1] RSPM lattice 0.22-9 2026-02-09 [3] CRAN (R 4.5.3) lazyeval 0.2.2 2019-03-15 [1] RSPM lifecycle 1.0.5 2026-01-08 [1] RSPM magrittr 2.0.4 2025-09-12 [1] RSPM MASS 7.3-65 2025-02-28 [3] CRAN (R 4.5.3) Matrix 1.7-4 2025-08-28 [3] CRAN (R 4.5.3) memoise 2.0.1 2021-11-26 [1] RSPM methods * 4.5.3 2026-03-11 [3] local mgcv 1.9-4 2025-11-07 [3] CRAN (R 4.5.3) mime 0.13 2025-03-17 [1] RSPM nlme 3.1-168 2025-03-31 [3] CRAN (R 4.5.3) nnet 7.3-20 2025-01-01 [3] CRAN (R 4.5.3) openssl 2.3.5 2026-02-26 [1] RSPM pak 0.9.2 2026-01-07 [2] local parallel 4.5.3 2026-03-11 [3] local pillar 1.11.1 2025-09-17 [1] RSPM pkgbuild 1.4.8 2025-05-26 [1] RSPM pkgconfig 2.0.3 2019-09-22 [1] RSPM pkgdown 2.2.0 2025-11-06 [1] any (@2.2.0) pkgload 1.5.0 2026-02-03 [1] RSPM praise 1.0.0 2015-08-11 [1] RSPM processx 3.8.6 2025-02-21 [1] RSPM ps 1.9.1 2025-04-12 [1] RSPM purrr 1.2.1 2026-01-09 [1] RSPM qcthat 1.1.2 2026-03-24 [1] Github (Gilead-BioStats/qcthat@d0958dc) R6 2.6.1 2025-02-15 [1] RSPM ragg 1.5.2 2026-03-23 [1] RSPM rappdirs 0.3.4 2026-01-17 [1] RSPM rex 1.2.1 2021-11-26 [1] RSPM rlang 1.1.7 2026-01-09 [1] RSPM rmarkdown 2.30 2025-09-28 [1] RSPM rpart 4.1.24 2025-01-07 [3] CRAN (R 4.5.3) rprojroot 2.1.1 2025-08-26 [1] RSPM rrapply 1.2.8 2025-11-25 [1] RSPM rstudioapi 0.18.0 2026-01-16 [1] RSPM sass 0.4.10 2025-04-11 [1] RSPM sessioninfo 1.2.3 2025-02-05 [1] any (@1.2.3) spatial 7.3-18 2025-01-01 [3] CRAN (R 4.5.3) splines 4.5.3 2026-03-11 [3] local stats * 4.5.3 2026-03-11 [3] local stats4 4.5.3 2026-03-11 [3] local stbl 0.2.0.9004 2026-03-24 [1] local stringi 1.8.7 2025-03-27 [1] RSPM stringr 1.6.0 2025-11-04 [1] RSPM survival 3.8-6 2026-01-16 [3] CRAN (R 4.5.3) sys 3.4.3 2024-10-04 [1] RSPM systemfonts 1.3.2 2026-03-05 [1] RSPM tcltk 4.5.3 2026-03-11 [3] local testthat 3.3.2 2026-01-11 [1] RSPM textshaping 1.0.5 2026-03-06 [1] RSPM tibble 3.3.1 2026-01-11 [1] RSPM tidyr 1.3.2 2025-12-19 [1] RSPM tidyselect 1.2.1 2024-03-11 [1] RSPM tinytex 0.58 2025-11-19 [1] RSPM tools 4.5.3 2026-03-11 [3] local usethis 3.2.1 2025-09-06 [1] RSPM utf8 1.2.6 2025-06-08 [1] RSPM utils * 4.5.3 2026-03-11 [3] local vctrs 0.7.2 2026-03-21 [1] RSPM waldo 0.6.2 2025-07-11 [1] RSPM whisker 0.4.1 2022-12-05 [1] RSPM withr 3.0.2 2024-10-28 [1] RSPM xfun 0.57 2026-03-20 [1] RSPM xml2 1.5.2 2026-01-17 [1] RSPM yaml 2.3.12 2025-12-10 [1] RSPM zip 2.3.3 2025-05-13 [1] RSPM [1] /home/runner/work/_temp/Library [2] /opt/R/4.5.3/lib/R/site-library [3] /opt/R/4.5.3/lib/R/library
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Use
pkgskill::use_ai()to set up AI infrastructure, then customize for stbl.