2025.10.3 geometric filtering, download and snapshot reliability

Changelog

• FEATURE Filtering by geometric coordinates
• IMPROVEMENT More options to download endpoint (e.g. sqlite files)
• BUG Restore missing snapshot thumbnails
• BUG More reliable downloads
• BUG Fix direct navigation to snapshots
• BUG Incorrect ligand file path handling in target loader
• BUG Squonk file transfer fails if no proteins supplied

f/e tickets

• 1821 Filtering by geometric coordinate
• 1936 Missing snapshot thumbnails
• 1908 Mpro download fails with 403
• 1912 Fix direct navigation to snapshots

b/e tickets

• 1821 Filtering by geometric coordinate
• 1935 Incorrect ligand file path handling in target loader
• 1934 Squonk file transfer fails if no proteins supplied
• 1932 More options to download endpoint (e.g. sqlite files)
• 1908 Mpro download fails with 403

f/e PRs

• Fixes for #1716 and #1902 by @boriskovar-m2ms in xchem/fragalysis-frontend#515
• fixes #1912 by @boriskovar-m2ms in xchem/fragalysis-frontend#516
• push to production by @mwinokan in xchem/fragalysis-frontend#517

b/e PRs

• Coordinate filter functionality in the backend (issue 1821) by @kaliif in xchem/fragalysis-backend#822
• Fixed a bug resolving ligand mol path (issue 1935) by @kaliif in xchem/fragalysis-backend#823
• Fix unbound object in squonk file transfer (issue 1934) by @kaliif in xchem/fragalysis-backend#824
• Remove protein and compound assertions (issue 1934) by @kaliif in xchem/fragalysis-backend#825
• Add option to include or exclude soakdb files to download serializer (issue 1932) by @kaliif in xchem/fragalysis-backend#826
• Push to production by @mwinokan in xchem/fragalysis-backend#828

stack PRs

• b/e -> 2025.10.3, f/e -> 2025.10.2 by @mwinokan in #126

Full Changelog: 2025.10.2...2025.10.3