Research Paper Workflow

Research Paper Workflow

The default workflow is evidence-first: create inspectable matrices and ledgers first, then draft prose.

Project Types

Type	Use When	Primary Outputs
research_paper	Publishable paper, workshop paper, journal paper, related work, experiments, rebuttal, revision	Literature matrix, novelty check, experiment matrix, claim ledger
undergraduate_thesis	Undergraduate thesis, graduation project, proposal, midterm report, final report, defense	Requirement log, scope ladder, graduation evidence map
hybrid_capstone_research	A capstone or thesis may later become a paper or portfolio project	Thesis MVP, evidence package, research upgrade plan

For hybrid work, satisfy school or advisor evidence expectations first, then decide whether to upgrade toward research-paper standards.

Standard Flow

Step	Decision	Action
1	Select project type	Set research_paper, undergraduate_thesis, or hybrid_capstone_research.
2	Identify stage	Topic selection, literature review, novelty, experiments, writing, revision, rebuttal, defense, or packaging.
3	Load minimal modules	Use only task-relevant modules plus core invariants.
4	Build structured artifacts	Create matrices and ledgers before final prose when evidence tracking matters.
5	Verify strong claims	Map each claim to literature, experiments, implementation evidence, tests, proofs, or official requirements.
6	Run integrity checks	Separate plans, preliminary results, and completed results. Do not invent requirements.
7	Draft or revise	Write final prose or rebuttal only after the evidence record is inspectable.
8	Human review	Submission, authorship, ethics, school compliance, and defense decisions require human confirmation.

Common Research Routes

Task	Recommended Route
Literature review	00_core_invariants, 01_agent_orchestrator, 06_literature_engine, 11_integrity_reproducibility_guard
Novelty or SOTA check	Add 07_novelty_verification_and_scoring, 11_integrity_reproducibility_guard
Experiment planning	Add 09_experiment_matrix_engine, 11_integrity_reproducibility_guard
Figure/table planning	Add 10_figure_table_engine
Rebuttal or simulated review	Add 13_simulated_review_rebuttal, 11_integrity_reproducibility_guard

中文说明

默认 workflow 是 evidence-first：先产出可检查的矩阵和 ledger，再写最终 prose。

标准流程：

1. 判断项目类型：research paper、undergraduate thesis 或 hybrid capstone research。
2. 判断阶段：选题、文献综述、novelty、实验、写作、修改、rebuttal、答辩或打包。
3. 加载最少必要模块。
4. 先建立结构化证据：literature matrix、experiment matrix、claim ledger。
5. 每个强 claim 都映射到文献、实验、实现、测试、证明或官方要求。
6. 做完整性检查：区分 planned、preliminary 和 completed。
7. 证据可检查后再写正文或 rebuttal。
8. 最终提交、作者署名、伦理和高风险 claim 需要人类确认。

对于 hybrid 工作，先满足学校或导师要求，再决定是否升级成 research-paper 标准。