rMVP 0.99.14

New features

• Added Brent method as default variance component estimation method.
• Output logs to disk by default.
• Hapmap2MVP now supports single-letter encoding and parallel format conversion.
• Added marker SE output.

Adjustment

• SNP map suffix changed from ".map" to ".geno.map"
• The strategy for computing PCs has been updated.
• Speed mode and memory mode in the priority parameter are now only used to construct the kinship matrix.
• Imputation in data format conversion does not generate intermediate files now.
• Data format conversion now no longer generates PC and K by default.

Bug fix

• !!! Fixed bug where SNP location was misaligned in multi-thread Bfile2MVP.
• Fixed multithreading error caused by VECLIB on Microsoft R Open for macOS
• replace mclapply with lapply on windows