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Teaching material for Summer Institute in Statistics for Big Data Module 1.

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Module 1: Accessing Biomedical Big Data

Agenda

Monday 8:30 am - 10:00 am

  • Motivation (Biology basics)
  • Introduction to Bioconductor
    • How to get it installed
    • How to search install packages
    • How to use it
  • Quick overview of the data.table package and SQL syntax

Monday 10:30 am - 12:00 pm

  • Querying and downloading genomic annotations using Bioconductor
  • Finding and downloading public gene expression data using the GEOmetadb and GEOquery Bioconductor packages

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Teaching material for Summer Institute in Statistics for Big Data Module 1.

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