Morpho 1.0beta2 (a.k.a. 0.99.1)

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Caution: the latest version of rgl (>= 0.93.963) is required

Changes in Morpho version 0.99.1 (2013-10-07)

• added option "fixRepro" in 'slider3d' and 'relaxLM' to supress
  reprojection of fix landmarks onto the surface. This can be useful
  when some fix landmarks are in "thin air".
• added support for point cloud export in 'mesh2ply' and 'mesh2obj'
• added option "silent" in 'rmUnrefVertex'
• fixed error in 'relWarps' preventing it to work for 2D configs
• added function 'checkLM'. Useful to visualize if projection by
  'placePatch' was successful by browsing through sample.
• added functions 'placePatch', 'createAtlas' and 'plotAtlas'
  for defining templates and functions to project (semi-) landmarks from
  an atlas onto all specimen in a given sample
• fixed missing '-1' subtraction in 'covW'
• added function 'mergeMeshes' to concatenate multiple triangular meshes.
• made function 'procAOVsym' (procrustes Anova for object
  symmetry) public.
• made functions 'cSize', 'mcNNindex', 'meshcube', 'meshres', 'ProcGPA' public.
• added option 'info' in 'read.mpp'
• merged 'CreateL' and 'CreateL2D'
• rewrote large parts of 'CVA', 'groupPCA' and 'permudist' to
  make the code more efficient
• 'covPCA' now allows permutation tests to check if pairwise
  distances between covariance matrices are significant and reports rownames for two-group case
• removed unnecessary complicated check for empty groups by simply using function 'factor' in 'covW' and 'typprobClass'
• white space formatting in code
• added option "mshape" to function 'orp' to specify a custom pole for projection
• made function 'fx', 'PCAcrova' and 'calcTang_U'
  interntal-only by prefixing function name with '.'
• removed unnecessary sinus calculation in 'angle.calc'
• added docu and examples for all newly exposed functions (see above)
• added examples for 'find.outliers'
• added more examples for covPCA, performing permutation tests
• added docu for function 'barycenter'
• added a lot of examples to docu and documented data(nose)
• added documentation for 'angle.calc'
• added example in 'relaxLM'
• added section "details" in procSym, added example in slider3d
• added example for procAOVsym
• changed parameters in examples for 'pls2B' and 'relaxLM' to decrease completion time
• removed obsolete Fortran code
• added minimum version for imported package 'Matrix'(>= 1.0-1)
• changed foreach, parallel and rgl (needs rgl version >=
  0.93.963) from 'Depends' to 'Imports' (affecting DESCRIPTION and NAMESPACE)
• massive NAMESPACE editing by switching to manual export instead of regular expression export