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v0.3.0

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@denisbeslic denisbeslic released this 26 Nov 14:17
· 57 commits to main since this release
v0.3.0
c236a22

v0.3.0 Release

Added

  • Added latest R9.4.1 and R10.4.1 models
  • Added Contributing Guide
  • Advanced Parameters: Introduced a --show-advanced-options flag for experimental parameters in prediction mode.
  • R9.4.1 Support: Added an R9.4.1 model and R9.4.1 profile for extended compatibility.
  • Dwell Time Parameters: Added dwell-mean and dwell-std parameters for users preferring static distributions for dwell time generation.
  • Model Download Simplification: Models can now be downloaded using the --profile argument, closes #7

Changed

  • Noise Generation: Switched from NumPy to PyTorch for noise generation, ensuring consistent dependencies.
  • Length Regulator: Fully transitioned to PyTorch, removing reliance on NumPy/Numba.
  • Performance Boosts: Achieved small speedups by minimizing GPU-CPU data transfers and avoiding NumPy usage wherever possible.
  • Preprocessing: Simplified preprocessing functions for improved maintainability.
  • UUID Generation: Automatically generate a UUID4 in genome mode for unique identifiers and compability with dorado
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