Chip_seq

The following operations were taken on the data:

• Generated simulated paired-end ChIP-Seq data with stronger enrichment signals.
• Executed the MACS3 peak caller on this simulated data from within an R script, attempting default model building.
• Loaded the resulting .narrowPeak file into R using rtracklayer (if peaks were found).
• Briefly inspected the GRanges object containing the peaks and visualized some basic properties (histograms).
• Visualized the raw read coverage for treatment and control alongside the called peaks in a specific genomic region using Gviz.