15bonte (75):
Improve nucleus_id_container typing
Correct relative import in training_pipeline
Merge pull request #6 from 15bonte/dependabot/github_actions/actions/setup-python-5
Correct linter error
Add init files
Correct imports
Merge branch 'main' of https://github.com/15bonte/cell_cycle_classification
Correct typing
Remove whitespaces
Ignore line too long error in lint
Add settings
Restore whitespace (black)
Ignore warnings
Remove balck check option
Test import
Update requirements
Correct typing
Allow mypy implicit optional
Remove useless import
Missing requirements
Add UMAP tools requirements
Correct test pipeline
Add tutorial notebooks
Update gitignore
Update out channels after parameters update
Enable own mean and std computation
Improve encoder_resnet with input with less than 3 channels
Add comments
Set number of epochs for VAE training
WIP train notebook
Comment out GradCam line
Make nucleus_id_container more robust
Update README
Comments and code cleaning
Split fodlers initialization
Working training notebook
Merge pull request #7 from 15bonte/dependabot/github_actions/codecov/codecov-action-5
Return attributes and limit memory use
Merge branch 'main' of https://github.com/15bonte/cell_cycle_classification
Return all interesting values in FucciVAE data set
Predict FUCCI values from z
Improve nucleus_id_container
Correct typing
Protect against missing probabilities
Simplify VAE protection assumption
Use with standard images
Freeze backbone by default
Add fold0 data set split files
Improve notebooks
Load model from HuggingFace
GitIgnore images
Set number of workers in params
Update README.md
Merge branch 'main' of https://github.com/15bonte/cell_cycle_classification
Protect against empty data directory
Correct classifier path
Do not print confusion matrix after training
Remove useless import
Add function to return cycle phase from file name
Adapt check_ready to h5 data folder
Replace deprecated np.bool
Update README.md
Update README.md
Add architecture.pdf
Update README.md
png instead of pdf
Merge branch 'main' of https://github.com/15bonte/cell_cycle_classification
Update README.md
Update README.md
Do not print CI
Update README.md
Force segmentation-models-pytorch version
Merge branch 'main' of https://github.com/15bonte/cell_cycle_classification
Add test image
Create jupyter notebook to predict cell cycle phase on a single image
dependabot[bot] (2):
Bump actions/setup-python from 4 to 5
Bump codecov/codecov-action from 4 to 5
